Solanum lycopersicum (tomato): 101245721
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Entry
101245721 CDS
T02665
Name
(RefSeq) uncharacterized protein isoform X2
KO
K14311
nuclear pore complex protein Nup188
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101245721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101245721
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101245721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CoV_NSP2_N
Na_H_antiport_2
Motif
Other DBs
NCBI-GeneID:
101245721
NCBI-ProteinID:
XP_004250794
LinkDB
All DBs
Position
11:47333534..47388642
Genome browser
AA seq
1979 aa
AA seq
DB search
MATTTEANDEASRRSTTKIVDASLWWDPFPQLLAELESVSPYSDLPSPLEKKIKENHAWF
LDTVSLFKPPNLKSREALDASRLKIGLHQITVETDKKEAAVKISSALCLDEVQSYILVDR
TIDQKCIVADGVFRELPHLVMLQYYLERQCLMKCTRHIIMQALYIATRSQDAFIVDEAQK
LISDGLDRKFFSVLQENLHSNFPENMDVDLYTLWAEEIVTEDNVVLDVLFLIFYEFCPCT
GELWKKLCLLYEGFISNSYNFGRLAVSAEAVSSIYHAKLQLLLILIETLDLENLLQMVHD
ETPFRHGYVTFSLSEVEEIDAMVSTFDVFENKESGPLVLAWAVFLCLISSLPGKEENSIL
MEIDHIGYVRQAFEAGSLSSFLEIIENDILRDFDGPITGFRSVLRTFLSAFIASYEINLQ
LEDGNLKLILDILCKIYQGEESLCTQFWDRESFVDGPIRCLLCSLEGEFPFRTAELLQLL
TALCEGAWPAECVFNFLDKSTGLSSPVDISSCAIVNDASQTVMVVQPLHLPGIEGLVIPS
GTRGHLLKMIDRDIALVRWEFPQSGIVVLLLRLAQGLYLEKTSEIVMTLGFLSRLVTFNM
GVCYSLLDLGGYMHDEMNSPTEHLRINVAEIICAFIKNLSPDCSGVELMSMGVKILAKML
KCSPYHVSRLIVQANIFDVAFKTNPFKVDSNGLSSGSWLLSGRLAKMLLIDCEQNDCQLT
LSVLDFTMQLMDSGMENDVVLALVIFSIQYVLVNHEFWNYKNKHTRWKVTLKVLEVLKKC
ILSISYIQKLGEVVKDILFGDSSIHNALCRLVCTTSDVLEKLYFSRLYGLTDIEGLQQAI
VLGLDILSSMLSDFSMVVPTFTVFCQAVISQTAKPVPVVTAVISLMSFFRNPKIQVGAAR
LLSRLFIIRDDSQSYAISSVCFGLDDKQIYNFKNTICSILCQEKVESEDLIIATFKMLTS
AARYQASFLTAVIALEENPISESCKGDNHPANNDALQCNAANLLDCIWIYVKRSDDLVMT
KSRIMCNVLNFLKALWQGAAHYTSLLKQLRNSDFWEKLLISAVLSISKKSCQSESTTKLE
LQNLAYKYQCQHNVLDVVACEMILQKKILHSELVTEESSKCLHNGSDGCKVATAESSCNL
KEIFGAWCGSSLDAETIKTFVSFEYDDSVKLRARVAAGLFAVRIMCKVKGGDRGSLSVSL
VDKITNLWQKLRKLPAFSELMAIYTKHGYRGGNELDNLILNDLFYHLQGELEGRQISHMS
FKELSQYLLQSNFLQTYQCKHHEDIFPQTDGVCLYDTDRLQGDMAIDLWDLSDWKASKAV
AEMLLLSLQNVNVMVSLTTSKLSALIALATTFSISDNDNVSFESLDNEIRSGRKIPEKSL
SSSIDNICQSLHRTIELLPSVSDASEDIVNILAAQAELLFHFTRSPSTHLSLSTCLLILK
TAGCGLKVLCNCRQLVTGVLFPMKIFLMLVLFSLQSSRRGSHLGVQTKIEHNEALAEAAN
VSLGLLPLICSCIELTEHCSLSVIITDQIIKGFSTLTTWFPIIQKHLPMQRIVLKLQDKS
SYSNIGIILKFLLTIAHVKEGAEMLVKTGFFASLSVLLADLSNGRPLSVVERERNLADTF
ENNERAQPIWGLSLAVVTAIINSLGESSIFNVEHVVTYFLLEKADLISYYLSAPDFPPDD
HDKKRLRALKPHTSLSALREIENTVMLICVLAKHRNTWSRAIKEMESQLRERCIHLLAFI
SCGTPRHGESQGRVPPIFCHPTIREEYEWHKKPSSINSKNGWFAFSAYCCSLNPKYSSFS
SRTGTVIKDQPNEHVNLTSQTHFSDAMSIQIYRITSLLLKFLCQQAEDAAARAEEVGFVD
LSHFPELPMPDILHCLQDQGISIVTELCEVNKLKQVSSEIQGVCVLLLQITVMALYLEFC
VIQICGMRPVHGHVEYFSKEFYALTKAMEGNAFLKESMNSLKQMVSFVYPELLQAEDLI
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atggccacaactacagaagctaatgatgaagcttcaagaagaagcaccaccaagattgtt
gatgcttcgctttggtgggaccccttccctcagttgctcgctgaactcgaatctgtttct
ccctactctgacctcccttctcctctggaaaagaagataaaggaaaaccatgcatggttt
ctggacacagtttcactatttaagccacctaacctgaaatcaagggaggctttagatgct
agccgactgaagattggtctacaccagattactgtagaaactgataaaaaagaagcagcc
gtgaaaattagttctgctttgtgtttggatgaggtgcagtcatatattcttgttgataga
accattgatcaaaaatgtattgttgctgatggtgtatttcgcgagcttcctcatttggtt
atgcttcagtattatttggaacgacaatgtttaatgaagtgcacacgtcatataattatg
caagctttatatatcgcgacaagatctcaagatgcgtttattgtagatgaggcacagaaa
ttgatttctgatggactggacaggaaattcttttctgtcctgcaggagaatctacactct
aactttcctgagaacatggatgttgacctttatactttgtgggctgaagaaatagtaact
gaagacaatgttgtactggatgttcttttcctcatattttacgagttctgcccctgcacg
ggtgaactgtggaaaaaattgtgcttactttatgagggattcatttcaaattcttataat
tttgggaggttggctgtatctgctgaagcagtttcctctatttatcatgccaaactgcag
ctgctgcttatcctcatagaaactttggatttggaaaatcttttgcagatggttcatgat
gaaactccgttcaggcatggttatgttactttttctttgtcggaggtggaagaaattgat
gctatggtatccacttttgatgttttcgaaaacaaagaatcgggaccattggttttggca
tgggcagtgtttctctgtctaatttcatctcttccaggaaaagaagaaaacagtatactg
atggagatcgatcatattggttatgtccgccaagcttttgaagctggatcattgagttct
tttcttgaaattattgaaaatgatatactgagggattttgatggcccaattactggtttt
agaagtgttttgcggacatttttatcagcatttattgcatcttatgagatcaatctccag
ctagaggatggtaacctgaaattgattttggatattctttgcaaaatttatcaaggagag
gagtccctttgtactcagttttgggatagggaaagttttgttgatggtcctatcaggtgc
cttctttgcagcttggagggtgaattcccatttagaactgctgaacttttacagttgtta
actgcactttgtgaaggagcgtggcctgcggaatgtgtatttaattttctagacaagtcc
actggattgtcgtctcctgttgacatcagtagctgtgcaattgtgaatgatgcttctcag
actgttatggtggtccaaccattacatcttcctggtattgaggggctggtcattcctagt
ggaacccgtggccatctgttaaagatgattgatagggatattgctctagtcagatgggag
ttcccgcaatctgggatagtagtgctgcttttgcgtttggcccaagggctgtacttggag
aaaaccagtgaaattgttatgactcttggatttctcagccggcttgtgactttcaacatg
ggtgtttgctattctcttctggaccttggtggctatatgcacgatgaaatgaattcacca
acagaacacctgcgtattaatgtggctgaaatcatttgtgcttttatcaagaatctgtct
cctgattgctctggtgtggagttgatgtcaatgggagttaagattttagcaaagatgtta
aaatgctcaccatatcatgtttcaaggttgatagtccaggcaaatatctttgatgttgct
tttaagacgaatcccttcaaagttgactccaatggcttatcgagtggatcgtggttgctt
tctggccggctcgcgaaaatgcttttgattgactgtgagcagaatgattgtcaattgaca
ctttcagtgcttgacttcacgatgcagcttatggattctggaatggaaaatgatgttgtc
cttgcactagtcattttctccattcagtatgtccttgttaatcatgaattctggaattat
aaaaacaagcacactcggtggaaggtgacactgaaggtgcttgaagtcttgaagaaatgc
attttgtccatttcatatatccagaaacttggcgaagtggtcaaggatattttatttggt
gattcttcaatccacaatgcactctgtcgacttgtttgcacaacttcagatgtcctggag
aagctctattttagccggctttatggactgacagacattgaaggattacagcaggctatt
gtcttgggattggatattctttccagtatgctttctgatttttcaatggttgtgcctact
ttcactgtcttttgtcaagcagtcatatcacagacggcaaaaccagtgcctgtggttact
gctgtgatatcactgatgtcattcttccgaaatcctaagatacaggtgggtgcagcaaga
ctgctctccaggttgtttattattagagacgactcacaatcatatgcaattagcagtgta
tgtttcggtctggatgacaagcagatctataattttaaaaataccatttgtagcattctt
tgtcaagagaaagtagaaagtgaggatctcataattgctactttcaagatgcttacttct
gctgcacgctatcaggcttcttttcttaccgctgtgatcgctttggaagaaaatccaatt
tctgaatcatgcaagggtgacaatcatccagccaacaatgatgcattacagtgcaatgct
gcaaacttattggattgcatatggatttatgttaaaagatctgatgatcttgtgatgacc
aaatcgcgtataatgtgtaatgtgctaaacttcctaaaagcattatggcaaggagctgct
cattatacaagtcttctgaagcagctgagaaattcagacttctgggaaaagctactgatt
tctgccgtgctctccataagtaagaagagttgccaatctgaaagcacgaccaaattggag
ctccaaaatctggcatacaaatatcagtgtcaacataatgtattggatgtggtggcctgt
gaaatgatcctgcagaaaaagattttacattctgagttggtcacagaagaatcttctaaa
tgtttacataatgggtcagatggatgtaaagtagcaacagctgaaagttcatgtaacctg
aaggaaatttttggagcgtggtgtgggagctcattggatgcggagactatcaagacattt
gtttcatttgagtatgatgattctgtaaagctgcgtgcaagggttgctgctggtctgttt
gctgtgcgcatcatgtgtaaagtaaaaggtggtgatagaggaagtttgtctgtttcactt
gttgataaaattactaacctgtggcaaaagttgaggaagttgccagccttttctgagttg
atggctatttatacgaagcatggttaccgtggaggaaatgaactggacaacttaattctc
aatgatttattctatcatctgcaaggagagcttgaaggtagacagatttcccacatgtca
ttcaaggagctgtcacaatatctgctacagtcaaatttcttgcaaacatatcagtgtaag
caccatgaggacattttccctcaaactgatggtgtctgcttatatgacactgaccgtctg
caaggggacatggctattgatttgtgggatctttcggattggaaagcatctaaagcggtt
gcagaaatgctgttgctctctttgcagaatgtgaatgtcatggtgtcactcacaacatcc
aagctttcagctttaatagctttggcaactactttctccatatctgacaatgataatgtg
agttttgagtcacttgataatgaaattaggagtggcagaaaaattcctgaaaaatcattg
tcatctagcattgataatatatgccagtctctccaccgcacaatcgagctattaccttct
gtttctgatgctagtgaagacatagttaatattcttgcagctcaagcagagttgcttttc
cactttaccaggtctccgagtacacatttatctttatcgacatgccttctgatattaaaa
acagcaggttgtggcctcaaggtgttgtgtaactgtaggcaattggttactggtgtcttg
tttccaatgaagatatttttgatgctagttctcttttcactccaatcaagtcggagaggt
tctcaccttggagtacaaacaaaaattgagcataatgaagccttagctgaggcagctaat
gtgagcttggggctactaccgctgatttgcagctgtattgaacttaccgaacattgttcc
ctctctgtgattattaccgatcaaataatcaaaggtttttcaacacttactacttggttc
cccataattcaaaaacatctcccaatgcagcgtattgttcttaaacttcaagataaaagc
tcctattcaaacattggcattatattgaagtttcttttgactattgcacatgtgaaggaa
ggtgctgagatgcttgtaaaaactggtttttttgcatcgttaagtgtgttgttggctgac
ctatctaacggtagacctctctcagtagttgagagggagagaaatctggcagacaccttt
gagaataatgaaagggctcaacccatttggggacttagcttggctgtggttacagcaatt
attaactctttaggagaaagttcgattttcaatgtggaacacgtggtgacttacttcctc
ttggagaaggctgatctaatttcatattatctaagtgctccggattttccaccagatgat
catgataagaaaagacttcgggcactcaaaccacatacttcattgagtgctcttagagag
attgaaaatacagttatgttaatctgtgttctggcaaagcataggaatacctggtcaagg
gccataaaagaaatggagtcacagttaagggaaagatgcatacatttattggcctttatt
agctgcggtacaccacgtcatggggaatcacaaggaagagttccccccatcttttgtcat
cctaccattagggaggagtacgagtggcacaaaaagccatcatctatcaatagcaaaaat
ggctggtttgctttttctgcatattgctgcagtctaaatcccaaatattcatctttttcg
tctagaactggtactgtgatcaaagatcaaccaaatgagcatgttaacctgacttcgcag
acacacttttcagatgcaatgtctattcagatatacagaattacctctcttctccttaag
tttttgtgccaacaagctgaagatgctgctgcaagggctgaagaagtgggttttgtcgat
ctttctcattttcctgagctaccaatgcctgatatccttcactgcttgcaggatcaagga
atatctattgtcactgagttgtgcgaagtcaacaagttgaagcaggtttcttctgaaata
caaggggtctgtgttttgctgttgcaaattactgttatggcattgtacctggaattttgt
gtgatccaaatctgtggaatgagacctgtccatggacacgttgagtacttctccaaggaa
ttttacgctctgacaaaagctatggaaggaaatgcatttctgaaagaatctatgaactcc
ttgaagcaaatggtgtcttttgtgtatcctgaattattgcaggcagaagatctaatatga
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