Solanum lycopersicum (tomato): 101245783
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Entry
101245783 CDS
T02665
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101245783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101245783
03016 Transfer RNA biogenesis [BR:
sly03016
]
101245783
Enzymes [BR:
sly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
101245783
Messenger RNA biogenesis [BR:
sly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
101245783
Transfer RNA biogenesis [BR:
sly03016
]
Prokaryotic type
tRNA degradation factors
101245783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
101245783
NCBI-ProteinID:
XP_010325062
LinkDB
All DBs
Position
8:55961584..55965450
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AA seq
906 aa
AA seq
DB search
MFANPSFHGRPLHFLPTVRNELCRSYAFPLQLHSTTYQFLASSTLENRRNRSRKRRRSLK
QFSVRASVDPQDLSLLAQDTAGVPGSPSPFSVRIPVGDRHITVETGLIGRQASGAVTIRD
GETIIYTTVCLADVPSEPADFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVLICRLI
DRPLRPTMPKGFYHETQLLSWVLSYDGVHPPDALSVTAAGIAMALSQVPNSQVIAGVRIG
LIGEKFILNPTIKEMENSKLDLLLAGTKEAILMIEGYCDFLPEDKLLEAVEVGQDAVRGI
CKEVEALVQKCGKPKMFDAIRLPPKELYKLVEEIAGSELVEVLQIKNKIPRRKALSSLED
NVISILSEKGYISTMEAFVSTETMPDLLEEEDEDEEVVVDGEVDEGDIHIKPVARKSVPL
LFSEVDVKLVFKEVMSKFLRKQIVDKGKRSDGRSPQEIRLIDARCGLLPRAHGSALFTRG
ETQSLAVVTLGDKQMAQKIDNLVDEDEYKRFYLQYSFPPSCVGEVGRVGAPSRREVGHGT
LAERALQPILPPEDDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIA
MGMVLDTKEFGGDGTPLILSDILGSEDASGDMDFKVAGNDVGITAFQMDIKVGGITLPIM
KQALLQAKDGRKHILAEMSKCSPPPSRELSKYAPLIHVMKVKPEKINLIIGAGGKKVKSI
IEETGVEAIETQDDGVVKITAKDLSSLEKSKAIISNLTMVPTVGDIYKNCEIKSVAPYGV
FVEIVPGREGLCHISELSANWLAKAEDAFKVGDRLDVKLIEINDKGQLRLSRRALLPDAE
TERQSTKPRSGSLSNDNAVSPKISDKGKLKKAVTVSKESENPLKEKTVPVNISSPVKEAD
KRSVSP
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccaaccctagcttccatggccgacctctacacttcctaccaacagttcgcaat
gaactctgcaggtcatacgctttccctctacagcttcacagcacaacctatcagtttctt
gcttcctcaacattggaaaacaggaggaacagaagccgaaaacgaagacgaagtcttaag
caattctccgtaagagcttcagttgaccctcaggacttgtctcttttagctcaggatact
gcaggagttccaggttctccttcccctttctctgttcgaattcctgttggtgatagacat
attaccgttgaaacaggtcttataggaaggcaagctagtggggctgttacaattagagat
ggagaaactattatctatacaactgtttgtttagctgatgtaccaagtgagcctgctgac
tttttcccactttctgtacattatcaagaacgtttctctgcagctggtaggactagtggg
gggttttttaaaagggaagggaggacgaaagatcatgaggttcttatttgtagattgata
gataggcctttacgtccaaccatgcctaaggggttttatcatgaaactcaactgctttct
tgggtattaagttatgatggtgtgcatccaccagatgcattgtcagttactgctgctgga
attgctatggctctgtcacaagtaccgaattcacaagttattgctggggttcgaattggt
cttattggtgaaaaattcatcctgaatccaaccattaaggaaatggagaactccaagttg
gatttgttactagcggggaccaaagaagcaatattgatgattgaggggtactgtgatttt
cttccggaggataagttgcttgaagctgtagaagttgggcaagatgctgtgcgaggtatc
tgcaaggaggtggaagctttagtgcagaaatgtggaaagcccaaaatgtttgatgcaatc
agattacctcctaaggagctgtataagctagtggaagaaattgctggcagtgagttagtg
gaagttctacaaatcaaaaacaagattccaagaagaaaggcgttatcatcactggaagat
aatgtaataagcatattgtctgaaaagggttatatcagtacgatggaagcttttgtgtca
actgagacgatgccagatttgctagaggaggaggacgaagatgaagaagtggtggttgat
ggtgaagttgatgagggtgatattcacataaagccagttgcaagaaaatctgtgccattg
ctgttctctgaggttgatgtgaagctggtatttaaggaagttatgtccaaatttttgcgg
aaacagattgtggacaagggtaagagaagtgatggaaggagtcctcaggagatacgattg
attgatgcacgctgtggactgcttcctagggcacatgggagtgctctcttcactcgaggt
gaaacacagtcactggcggtggtaacacttggagataagcaaatggcacagaagatagac
aaccttgtggatgaagatgaatacaagagattttatcttcagtactcatttccaccctct
tgcgttggtgaagttgggagggtaggggccccatctagaagagaagttggtcatggcacg
cttgcagagagagcactacaaccaatactgccccctgaagatgacttcccttacactgtt
cgtgttgagagtaccatcactgaaagcaatggttcgtcgagtatggcgtctgtatgtggt
gggtgcttagctttgcaagatgccggtgttcctgttaagtgttctattgcaggtattgca
atgggtatggttctggacacaaaggaatttggtggagatggaactccactcatcctttca
gatatattgggttctgaagatgcatcaggagatatggatttcaaggttgctggaaatgat
gttggtattacagcatttcagatggacataaaggttggaggaatcacactgccaatcatg
aaacaagctctcttacaagcaaaagatggtcgaaagcacattcttgctgagatgtcaaaa
tgctcaccacccccttcaagagagctgtcgaaatatgctccgctcatccatgttatgaag
gttaaaccagaaaagataaaccttataattggcgccggtggaaagaaggtgaagagcatt
attgaagaaactggtgttgaagctattgaaacacaagatgatggtgtggtgaaaataact
gcaaaggatttgtcaagcctggaaaagtcaaaagccatcataagtaatctaacaatggtt
ccaactgttggtgacatatataagaactgtgaaattaaatcggttgcgccttatggtgtt
tttgtggagatcgtgcctggacgagagggattatgccatatcagtgagctgagtgcaaat
tggctagccaaggctgaagatgctttcaaagttggagaccgcctggatgtcaagctcata
gagatcaatgacaaggggcagcttcgcttaagccgacgtgcattacttccagatgctgag
accgagagacaaagtacaaaaccacgcagtggtagcctttcaaatgacaatgcagtttca
ccaaaaatttcagacaagggtaaattaaagaaagctgtgaccgtctcaaaggagagtgag
aatcctctgaaggagaaaacagttccggtcaacatatcaagcccagtgaaagaagcagac
aagagatcagtaagtccataa
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