Solanum lycopersicum (tomato): 101245796
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Entry
101245796 CDS
T02665
Name
(RefSeq) ATP-dependent helicase BRM isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101245796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101245796
03036 Chromosome and associated proteins [BR:
sly03036
]
101245796
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101245796
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
101245796
Chromatin remodeling factors
BAF complex
101245796
PBAF complex
101245796
GBAF(ncBAF) complex
101245796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
101245796
NCBI-ProteinID:
XP_010326507
LinkDB
All DBs
Position
1:82013707..82026084
Genome browser
AA seq
2243 aa
AA seq
DB search
MQSGGGAQQGGVAGAGGGHGRNTAASASASPTSSSSASHMGLDQQQLHQQHQRQSLQQQL
LRRPEGNEAILAFQTGSPHGILGGGNFVGPSGSMQLPQQSRRYIEQHDSPTIREDGQNRS
QGFEQPMLSPVQQAYLQYAFQAAQQKSALGMQHQQQMKMGMFGPSAKDQDPRLANMKIQE
LVSMQAPNQAQASSSKISSEQLFSRSEKQSDQGQQFMTDQRPDPKLPSQPTLLGQTVATK
PMQAPPSQQSMANMASNSLAMAAQMQAMQAMQALAYERNVDLSLPANANIMQQLIPLMQS
RMIAQQKVPENNVPVQSSSGHMPKQQVSSPQVANDSSPHAHSSSDLSGSSSAKTRQAVTT
GPLTASHSVASVNNPNNIPQQQFSAHGRENNLPPRQPIMASSGLPPMHYPQSSVNPNQGA
DNTSLPKPASNAQEILQTQYARQLSRPSSHSAASSPDGNSGNPLMSQGGNVRQVQPQLGF
SKQQLHVLKAQILAFRRIKKGDGTLPRELLQAIIPPPLDVQMQQTFPPGGIVNQERTPGK
GSEDNRRPSEPSEKGPQLVVPSNGPNGSKEEVTREESTAAATATATATAPVPGSTTETKE
NASVVLPGKEEQRIMGHTSKSDQDADHAIKNTTGRGDIAPDRGKAVASQVTGSDTTQVKK
AMQSSATQQKDTGPARKYHGPLFDFPFFTRKHDGFGPSMMMNNNNNLTLGYDIKDLLMEE
GSEFHKRKREESIKKIGDILAINLERKRIRPDLVLRLQIEEKKLRLAGIQARMRDEIDQQ
QQEIMAMPDRHYRKFVRLCERQRQDLSRQVQASQKASREKQLKLIFQWRKKLLEAHWAIR
DARTARNRGVAKYHERMLREFSKKKDDNRNERMEALKNNDVERYREMLLEQQTNVPGDGA
ERYAVLSSFLSQTEEYLHKLGGKITATKKQQEVDEAANAAAVAARAQGLSEEEVRAAAAC
AREEVMIRNRFSEMNAPRDGSSVNKYYHLAHAVNERVIKQPSMLRAGTLRDYQLVGLQWM
LSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKQNYGPHLIIVPNAVLVNWKSEFLNW
LPSASCIFYVGGKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRAKLSKVDWKYIIIDEAQ
RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSK
PFQKEGPTHNAEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCRM
SGFQSAVYDWIKSTGTLRVDPEDEKRRAEKNPNYQPKTYKVLNNRCMELRKTCNHPLLNY
PYLNVTKDFLVKSCGKLWILDRILIKLQRAGHRVLLFSTMTKLLDILEEHLQWRRLVYRR
IDGTTSLEDRESAIVDFNSPDTDCFIFLLSIRAAGRGLNLQTADTVIIYDPDPNPKNEEQ
AVARAHRIGQKREVKVIYLEAVVDKIASHQKEDEYRGGVVDSDDDLAGKDRYMGSIESLI
RNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETLHDVPSLQEVNRM
IARSEEEVEQFDQMDEEYDWEEEMTRYDQVPKWLRASSKDVNMAIANLAKKPSKNVLFSS
GVGVDSSGLAPESEKKRGRPKGKKVPIYTELDDDNGEFSEASSGERNGYSAHEDGEIGEF
EDDEFSGAVGVTPVNKDQSEEDGPSFADRYEYHQGPQGAIKTRVPDQLGSSGSSSDNQRP
TQIVSSSVSSQQKFGSLSALDARPSSRAKRMADELEEGEIAVSGDSHVDLQQSGSWIQDR
DEGEDEQVLQPKIKRKRSLRVRPRQATERPEEALIEKPAVQRGDSSQMAFQGDRRYDLQM
RNDRGHKTHAGPSGPKNNQNDASFKSKRSIPSRKSSSNSVKVYGLGKPGKVSRLSPDDAF
EPTRESWDNKLMNASGTYSGGTKMSEVIQRKCKTVVTKLQKKIEKGGHQIIPLLHGLWKR
IGSSGCMGGSEDSPFGLQTIDLRVDESEYSGVLEFVSDVQLMLKRAVQYFGFSHEVRSEA
RKVHDLFFDILKIEFPETDFREARNSISFAGPAASTTPASSRLMPVGQNKRHKLINEMEP
DSSPLLKPQTRGTLHASEDAKAKSHMAQRETRFGGSSSRELSQQDDSRPFTHPGELVICK
KKRKDREKLGLKPGSSSAGPVSPPGVSRSIRSPGSLPTVKEGGRLNQQTPQQLNGSGSSS
SVGWANPVKRLRSDSARRRQSHL
NT seq
6732 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctgggggtggagctcagcaaggtggtgtcgccggcgccggtggtggacatggg
cggaacacggcggcatcagcctcagcttctccaacatcatcttcttctgcctctcatatg
gggttggatcagcagcagctgcatcaacagcatcagcggcagtcattacaacaacagtta
cttagaaggcctgaaggaaacgaagctattctggccttccagactggcagtccccatgga
attttaggtgggggtaattttgttggaccttctggatccatgcagctgcctcagcagtcg
aggaggtatattgaacagcatgattctcccaccattcgagaggatggacagaacaggagc
cagggctttgagcaaccgatgttgagtcctgtccaacaggcatacctgcagtatgctttc
caggcagcacaacagaagtccgctcttgggatgcaacatcagcagcaaatgaaaatggga
atgtttgggccttctgcaaaggaccaagatcctagacttgctaatatgaaaattcaggaa
ctcgtttccatgcaggcaccgaaccaggcccaagcatcatcatcaaagatatcctctgag
caacttttctctcgtagcgagaaacaatcagaccagggacagcagtttatgaccgatcag
aggccagacccaaagcttccttcccagccaacattgcttggccaaacggtagctacgaag
cccatgcaggcgccaccatctcagcaaagcatggcgaacatggcgagtaactctcttgct
atggctgcacagatgcaggcaatgcaggcaatgcaggctctggcttatgaacgtaatgtt
gatctgtcactacctgcaaatgctaacattatgcaacagctaattccgctcatgcagtcc
agaatgattgcccagcagaaagtgcctgaaaacaatgtgccagttcaatcttcatcaggt
catatgccaaagcagcaagtttcatcacctcaagttgcaaatgacagttcgccccatgct
cattcttcaagtgatttgtcggggtcaagttctgctaaaactaggcaggctgttacaact
ggtcctctcactgcgtctcatagtgtagcttcagtgaataacccaaataatattcctcag
cagcagttttctgctcatggcagagagaacaatttgcctcctagacaaccaattatggct
agcagtggattacctccgatgcattacccacagtcatctgtaaacccaaaccagggtgcg
gataacacctcgctgcctaaacccgcctctaatgcccaagaaatcttgcagacgcagtat
gccaggcagttgagtcgaccttcatcacattctgcagcttcttctccagatgggaactcg
gggaatccccttatgtctcagggtggaaatgtccgtcaggtgcaaccacaactgggtttc
agtaagcagcaactgcatgttcttaaagcccaaatacttgcatttagacgtataaagaaa
ggagatgggacattaccacgtgaattactccaagctataattccgccacctctggatgtg
caaatgcagcaaacatttccacctggtggtatagtaaatcaggagagaacaccaggaaaa
ggttcagaagataacagaagaccctcggaaccaagtgagaagggtcctcagcttgtagta
ccatctaatggaccgaatggttcaaaggaggaggtcacaagagaggagagtacagctgcc
gcaaccgcaaccgcaaccgcaaccgcacctgtgccaggtagcacaactgagacaaaggag
aatgcatcagtggttcttcctggaaaagaggagcagcgaatcatgggacatactagtaaa
tctgaccaggatgctgatcatgctattaagaacactactggcagaggtgatattgcacca
gataggggtaaagctgttgcatcacaagttactggttctgatactactcaggtgaaaaaa
gctatgcaatctagtgctactcaacaaaaagatacgggcccagctcgaaagtatcatgga
ccattattcgattttcctttcttcactcgaaagcatgatggttttggaccatccatgatg
atgaacaacaacaataatttaacattgggttatgatatcaaggatcttctaatggaggaa
ggctcagaatttcacaagagaaaaagggaggaaagtataaagaagattggtgatatacta
gctattaatttagagaggaaaaggattagaccagatcttgttctaagattgcaaatagaa
gaaaagaaactccgacttgctggtatacaggcacgaatgagggatgagattgaccaacag
cagcaggagataatggcaatgcctgataggcattaccgaaaattcgtaaggctgtgcgag
cgtcaacgtcaggatctatctaggcaagtgcaggcctcccagaaagctagcagagaaaaa
caattaaaattaatttttcaatggcgtaagaagcttcttgaggctcattgggcaatacgt
gatgctcgaactgcacgcaacaggggagtagctaagtatcatgagaggatgttgagggag
ttctcaaagaaaaaggatgataaccggaatgaaagaatggaggcgttgaagaataatgat
gttgagagatacagggagatgttgctagagcagcagaccaatgttcctggtgatggtgct
gagagatatgctgttctttcatcatttttgagtcagacagaagagtatcttcataaattg
ggaggtaaaattacagccacaaaaaagcagcaggaggttgacgaggctgcaaatgctgct
gcggttgctgcacgtgcacagggcctctctgaagaagaagtaagagctgcagcagcctgt
gctcgggaggaagtcatgattaggaatcgtttctctgaaatgaatgcacccagagatggt
tcatcagttaacaagtattaccatcttgcccatgctgtgaatgaaagggttatcaagcag
ccttccatgttaagggctggaactttgcgagactatcagcttgttgggttgcagtggatg
ctttctttgtataataataagctaaatggtatattggctgatgagatgggtctggggaag
actgtgcaggttatggcattaattgcttatttgatggaattcaaacaaaactatggacca
catcttataattgtgccaaatgcagttctagttaattggaagagtgagtttctcaattgg
cttccatctgcgtcctgcattttctatgttggtggaaaggatcaaagatcgaagttattt
tcgcaggaagtttgtgcgatgaagtttaatgtacttgtcactacgtacgagttcatcatg
tatgatcgtgctaaactttcaaaagtcgattggaagtatataataattgatgaggcacag
cgtatgaaggatagggagtcagttcttgctcgcgatcttgacagatatcgatgccaaagg
cgcttgcttctcacagggacaccattgcagaatgatctgaaggaattgtggtcacttcta
aatctactacttccagaagtatttgataatcgcaaagcatttcatgattggttctctaag
ccctttcagaaagaaggtccgacacacaatgccgaagatgactggcttgagactgagaag
aaggtcattgttatccatcgacttcaccaaattcttgagcctttcatgctcaggcgtcgt
gttgaagatgttgaaggttcacttccccccaaggtctcagttgtcttaagatgcagaatg
tcaggttttcagagcgctgtttatgattggatcaagtctactggtacacttagagttgac
cctgaagatgagaagcgaagggctgaaaaaaatccaaattaccagcctaaaacatataaa
gttttaaataatagatgtatggaacttcggaaaacttgcaaccatcctttgctcaactat
ccatatctcaatgttacaaaggactttcttgttaaatcatgtgggaaattgtggattctt
gatcgaatattaattaaacttcaaagagcagggcacagggtgcttcttttcagtaccatg
acaaaactgcttgatatcttggaggagcatttgcagtggcgacgactcgtctatagaagg
attgacgggacaacaagcctagaggaccgtgaatccgctattgtggattttaatagtcca
gatactgattgctttatcttcttgctaagcattcgtgctgctggtcgtggattaaatctg
cagactgctgatactgtcatcatctatgatcctgatccaaaccccaaaaatgaggaacag
gcagttgcaagagcccatcgcatagggcagaagagagaagttaaagtcatttacttggag
gcagttgtggacaaaattgcaagtcatcagaaagaggatgaataccgtggaggcgtagtt
gattctgatgatgacctcgcaggcaaggaccgctatatgggatcgattgagagtctcatt
cggaacaacattcaacagtataagattgatatggctgatgaagttattaatgctgggcgt
tttgaccaaaggactacacatgaagagcgacgtttgactttagagacattattacatgat
gaggagagatatcaggagacacttcacgatgttccctctcttcaggaggtaaatcgcatg
attgctaggagtgaagaagaggtagaacaatttgatcaaatggatgaagaatatgattgg
gaagaggagatgactagatatgaccaggttccgaagtggcttcgtgcttccagtaaggat
gttaatatggccatagccaatctagcaaaaaagccctcaaagaatgtcttattcagtagt
ggtgttggtgtggactccagtggattagctcctgaatctgagaagaaaagggggcggcct
aaaggtaagaaggttcctatttacacagaattggatgatgacaacggtgagttctctgaa
gcaagttctggggagaggaatggatattcagcccatgaagatggtgaaattggggaattc
gaagatgatgaatttagtggtgcagttggtgttacaccagttaacaaagaccagtcagaa
gaagatggtcccagttttgctgatagatatgaataccaccaaggtccacaaggtgctata
aagactcgtgtacccgatcaattaggttcatcaggatcatcttcagacaaccaaaggccg
acacagatagtatcatcgtctgtttcatctcagcagaaatttggttctctttctgcattg
gatgccagacccagttctcgggccaaaaggatggcagatgaattagaggaaggagaaatt
gcagtatctggagactcacatgtggatctccagcaatctggtagttggatccaagatcgt
gatgaaggtgaagacgaacaggtgttgcagcccaaaataaaaaggaaacgcagtttgagg
gttcgaccaaggcaggctacagaaaggccagaagaggcgctcattgagaagccagctgtg
cagcgtggagattcttctcagatggcatttcaaggggatcgtagatatgatctccaaatg
agaaatgaccgtggacacaaaacgcatgcagggcctagtggtccaaagaataatcaaaat
gatgcatcctttaagagtaagcgaagcataccttcaaggaaatcatcttctaattcagtg
aaggtgtatggtttaggaaaacctggaaaagtcagtcgcttgtcccctgatgatgctttt
gaacccacaagggaaagttgggataataagctcatgaatgccagcgggacttatagtgga
gggactaagatgtctgaggtcattcaaagaaagtgcaaaactgtcgttaccaaactccaa
aagaaaatagagaagggaggtcatcaaataattccgctgctacacggtctgtggaaaaga
attggtagttctggttgcatgggtgggtcagaggatagtccgtttggtttacagacaatt
gatctacgcgttgatgagtctgagtacagcggagtgctcgaatttgtgtctgatgtgcag
ctgatgttaaaacgtgcagtacagtacttcggtttctcacatgaggtgagatctgaagca
aggaaagtgcatgatcttttctttgacatcttgaagatagaatttccggagactgatttt
cgagaagcaaggaattccatttcttttgctggaccagcagcttctactacacccgcgtct
tcacggctgatgcctgtaggtcaaaacaagagacacaaactgataaatgaaatggaaccc
gactctagcccactgctgaagccgcagacacgtggaacactccatgccagtgaagatgcc
aaggctaagagtcatatggctcaaagagaaacaagatttggtggtagcagtagccgggag
cttagccaacaggatgattcacgcccattcactcatcccggggagcttgttatttgcaaa
aagaaaagaaaagatagagagaagttgggtttgaaacccgggagtagttctgctggtcct
gtctcaccacctggtgtcagccgcagtatcagaagtcctggctcactcccaactgtgaag
gaggggggaaggttaaaccagcagacaccccaacagttgaatggcagtggtagcagcagc
tctgttggctgggcaaaccctgtgaagagattgagatcagattctgcaagaagacggcaa
agtcatttatga
DBGET
integrated database retrieval system
