Solanum lycopersicum (tomato): 101246003
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Entry
101246003 CDS
T02665
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101246003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101246003
03019 Messenger RNA biogenesis [BR:
sly03019
]
101246003
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101246003
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101246003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
DUF3902
Motif
Other DBs
NCBI-GeneID:
101246003
NCBI-ProteinID:
XP_010312242
LinkDB
All DBs
Position
10:complement(62563451..62574452)
Genome browser
AA seq
1060 aa
AA seq
DB search
MKSSRRSCLESDTKKPRLNEDSIGINRISNEGSFIPQRAVNSGSVAPRFRAIDSWEDPEN
SDPLCEPYQPQHQQQHQQQQQLISEYKRALAELTINSKPIITNLTIIAGENMRDAKAIAA
IICANILEIPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPSVHSGMQ
RLFVTWRKVFPPQQLQLIEKELGFTTGVNGSSSGARRDDSKAQQTAHSIHVNPKYLEARQ
CLQQSTRVKGSADDITPGDIQKPERATSVGSERSWFDLSAKFVQKEQLNERIREKTTSAA
YGDPEYVSDLSRGSGFGLRITGEKLKEEGRDKSWYNLANGKIIQRNGLDLKHGVQSLSQN
TANSDAYPQPTHSFANQSDTLMGRSWQSSDEEEYMWDDVNCADKDQRASKEPYKSGLDNQ
HPRPQNIFGLKAESEASADSFSREDNGQESSENQISSMWSDEARHLASVRSTPDHPRGYL
PSFSGSTATNSIVGKSFQSQKDSSHEGTPSYGIAKTASLSRGTIMQPLETQGAAPPSLES
ARRQLPLSPSISTGNFNQVVNSRTSEYHTQTESHADPRMSQFSRRSNLDPRKQVLPMTSQ
SAHLISSQISHTSRYNPSSVMSSFQEEHHVSFPEKIQQESPESEFSIPSQKSIVTQLSGF
ADHSSTVPSILHGSESSSQTSMSSLLAAVMKSGVLNSSSSVGTPLNSRDKGPLSSQAGAQ
SPLPSGPPIQLLSSGPKAPRSVVSIQSDRNASNPPSYSQRNGERPRLPPDSAPTPVGSES
LQAPNVVNAASNPVAKLLNSLMAKGLISASKEEFPTSTPPPTPPQTQFQCPPASISSVPG
VSAPITSPTYSSQKDELSLSKPAAKIPVALPQSNKEEREDAFKPGVIRESNPGVISELLD
DVPHQCGICGLRLKLRLQLDRHLEWHALRNPDGKLLHSERRWYLNFGEWIDGTGSIPHSG
ILAGPTGVSSKLSECTEVMVPADESQCVCVLCGQGFEDFYDEKSDKWMFKGAIYMDDSLN
ESGIQNCIVHENCTSEGSQNWMLKDDIKQESEDWFSDFMD
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaagagttctcgtagatcatgtctggaatcagatacaaaaaaacccagattaaacgaa
gattctattggaatcaatcgcatttcaaatgaagggagttttatcccacaacgggctgtg
aattcaggctctgttgccccgaggtttcgggcaattgatagttgggaagatcctgagaac
agtgatccactctgtgaaccttaccagccgcaacatcagcagcaacaccagcagcaacaa
cagcttatcagtgaatacaagagagccttagcagagctcactattaattccaagccgata
atcacgaatttgactattattgctggtgaaaatatgcgtgatgcgaaggccattgctgct
attatctgcgcgaacattcttgagattcctagtgagcaaaagctgccatctctctatctt
ttggacagtattgtgaagaatatcgggagggattatatcaagtattttgctgccaggctg
cctgaggttttctgcaaggcttatagacaggtagaaccttcggtacactctgggatgcag
cgtctttttgtaacctggagaaaagtattccctccacagcagcttcaacttattgagaag
gagcttggatttacaactggtgtcaatggctcctcatcaggagcacgtagagatgattcg
aaggctcaacagactgcacatagcattcatgtaaatcccaagtatttagaagcaaggcag
tgcctacaacaatcaaccagagtaaaaggatcagctgatgacatcactccaggggacata
cagaaaccagagagagcaaccagtgtaggttctgaaagatcttggttcgatctgtctgct
aagtttgttcagaaagagcagttgaatgagcgaatccgtgagaaaactacaagtgcagca
tatggagatcctgaatatgtttctgatttgtcaaggggttctggctttggattaagaata
acaggtgaaaagctaaaggaagagggacgtgataaatcttggtacaatcttgcaaatggt
aagataattcaaagaaatggcttggaccttaagcatggagtccaaagtctatctcagaat
acagcaaactctgatgcatatccacaaccgacacactcctttgccaatcagagtgatacg
ttgatgggtcggagttggcagagttctgatgaagaggagtatatgtgggatgatgtcaat
tgtgcagataaagatcaacgggcatccaaagaaccatataaatctggcttagataatcaa
catccgagaccccaaaacatatttgggttaaaggctgaaagtgaagcctcggctgactct
ttttccagagaagacaatggccaagaatcttccgagaatcaaatatcatcgatgtggtca
gatgaagctaggcatttggcttctgttcgaagtactccagatcatccaagaggttatcta
ccctctttcagtgggtcaacagcgacaaattccatagttgggaaatcattccagtcacag
aaagattcaagtcatgaggggacaccaagttatggaatagcgaagactgcaagtttatcc
aggggaaccataatgcaaccgctagaaactcagggagctgcccctccatctttagagtca
gcgaggcgtcagcttcctctgtctccatcaatctcaaccggcaattttaatcaagtagtt
aacagtcgtactagcgagtatcatacacagactgaatctcatgcagatccaagaatgtct
cagttttcgaggaggtcaaatttagatccccgtaagcaagttctgccaatgacatcgcag
agtgctcatttaattagttcacagatatcacatacttcaagatataatccatcttccgtg
atgtcatcttttcaagaagaacatcatgtctcttttcctgaaaaaatccagcaagaaagt
cctgaatctgaattttccattcccagccaaaagtcaatagtcactcagctttctggtttt
gctgatcattctagcactgtgccttccattcttcatggctctgaatcctcaagtcaaacg
agtatgagtagtctgttggctgctgttatgaagagtggagtacttaatagtagctctagt
gtcggcacaccacttaattctcgtgataaggggcctctgtcatcccaagccggtgcacag
tctcctttaccaagtggtcctcctatccaacttttgtcatctggaccaaaggctccacgt
tctgttgtgagcatacaatcggacagaaatgcttcaaatcccccaagttattcccagaga
aatggagaacgaccacgactgccacctgacagtgctccaactccggtaggtagtgaatca
ttgcaggctccaaatgtggtaaatgctgcttctaatcctgttgcaaaacttttgaattca
ttgatggcaaagggattgatatctgcgtcaaaggaggagtttccaacttcaactcctcca
ccgacacctccacaaactcagttccagtgtcctcctgcaagcatcagttcagttcctggt
gtatctgctccgattacctcacccacctactcgtctcaaaaggatgagctgtctctctct
aaacctgctgctaaaatccctgttgcactacctcagtccaacaaagaagagagagaagat
gcatttaaaccaggtgtaattcgggagtccaatcctggtgtcattagtgaacttcttgat
gacgttccacatcaatgtggcatatgtggtcttcgacttaagctccgactgcagctcgat
agacacttggaatggcacgcattaaggaatccagatgggaaactgttgcatagtgaaagg
aggtggtatttgaattttggggaatggattgatggaaccggtagcatcccacactctggt
atattggcaggaccaactggagtttctagcaaactatcagaatgcactgaggttatggtt
cctgctgatgaaagtcagtgtgtatgtgtcttgtgtggtcagggttttgaagatttttat
gatgaaaagagtgacaagtggatgttcaaaggagctatttacatggatgattcattgaac
gaaagcggtattcagaattgtatagtccatgagaactgtacatcagagggttctcaaaat
tggatgcttaaggatgatataaaacaggagtcggaagactggttttctgatttcatggat
taa
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integrated database retrieval system
