Solanum lycopersicum (tomato): 101246391
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Entry
101246391 CDS
T02665
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101246391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101246391
03009 Ribosome biogenesis [BR:
sly03009
]
101246391
04131 Membrane trafficking [BR:
sly04131
]
101246391
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sly04147
]
101246391
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
101246391
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
101246391
Membrane trafficking [BR:
sly04131
]
SNARE
SNARE associated proteins
Others
101246391
Autophagy
Aggrephagy
Other aggrephagy associated proteins
101246391
Exosome [BR:
sly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
101246391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_22
AAA_5
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
ATPase_2
AAA_18
Parvo_NS1
Vps4_C
ABC_tran
IstB_IS21
Viral_helicase1
NACHT
AAA_7
NB-ARC
AAA_lid_PRS2_C
AAA_24
TsaE
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
101246391
NCBI-ProteinID:
XP_004249485
UniProt:
A0A3Q7IMF7
LinkDB
All DBs
Position
10:62919536..62924799
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AA seq
808 aa
AA seq
DB search
MTNKAESSDSKGTKRDFSTAILERKKSPNRLVVDEATNDDNSVVAIHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDVPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCV
VAPDTEIFCEGEPVIREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLERICKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSSGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSEN
PEAMEEDVEDEVPEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSE
TSTAGTTGTAADPFATSAGGADEDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgactaacaaagctgaatcttccgattctaaagggacaaagagggattttagtacagcg
attttggagaggaagaagtcgccgaatcgacttgtggtggatgaagcaaccaatgatgat
aactctgttgttgctattcatcctgatactatggagaagcttcagctttttcgtggtgac
actatattgatcaagggtaagaagagaaaagatacaatctgcatcgcccttgctgatgac
acctgtgacgtgccaaagattaggatgaacaaggttgtcagaaataacctgagggttcga
cttggtgatgttgtctctgtgcatcagtgtcctgatgtcaaatatggcaaacgcgtacac
attcttcccattgatgacaccattgaaggagtcactgggaacctttttgatgcttacttg
aagccctattttcttgaagcatacagaccagttaggaagggtgatctttttctggtaagg
ggaggcatgagaagtgttgagttcaaggttatcgagactgatcccgctgaatactgtgtt
gttgcccctgatactgaaatattttgtgagggtgaacctgtgattagggaagatgagaat
agactagatgaggttggttatgacgatgttggtggtgtgcgtaaacaaatggctcagata
agggagcttgttgagctgccactaaggcacccacaactcttcaaatctattggtgtcaag
cctcccaaaggaattttgttgtatggacctcctggatcaggaaagactttaatagcccga
gctgttgcaaatgagactggtgcgttctttttctgcattaatggtccagagatcatgtct
aagttggcgggagaaagtgaaagtaatctcagaaaagcatttgaagaagctgagaagaat
gcaccatcaattattttcatcgacgaaattgattcaattgctcctaaacgtgagaagaca
aatggagaggtggagcggaggattgtctcccagcttttgacacttatggatggacttaag
tcacgtgcccatgtaattgttatgggtgccactaatcgccccaatagcattgaccctgcc
ttaagaaggtttggtagatttgacagggaaatagacattggtgttccggatgaagtgggg
cgtcttgaggtgcttcgtatccatacaaagaacatgaagcttgctgaagaagttgattta
gaaagaatttgcaaagacactcatggttatgttggagccgatttagcagctttgtgtacc
gaggctgcacttcaatgcatcagagagaagatggacgtgatagatttggaggatgagacc
attgatgcagagattcttaactcaatggctgtgacaaatgagcacttccaaactgctctt
gggacgagcaatccttctgccttgcgtgaaaccgttgttgaagttcccaatgtttcatgg
gaggatattggaggacttgagaatgtcaagcgtgagctccaagagactgttcaatatcca
gtggagcatcctgagaaatttgagaagtttggtatgtctccctcgaagggagtccttttc
tatggcccacctggatgtggtaaaactttgctcgcaaaggccattgcaaatgaatgccag
gctaacttcatcagtatcaagggtccagagctgcttaccatgtggtttggagagagtgaa
gccaacgttagagaaatatttgacaaggcccgccaatctgctccgtgtgtcctgtttttt
gatgaactagactcaatcgccacacagagaggaagtagttcgggagacgctgggggagct
gctgacagagttctgaatcaactcctcactgaaatggatggcatgaacgctaagaaaact
gtgttcattattggtgcaaccaataggccagacattattgatcctgcacttttgcgtcct
ggtcgtcttgaccaattgatttatattcctctccctgatgaagattctcgtcaccaaatt
ttcaaggcatgcctaaggaaatcacctctttctaaggatatcgatctaagagctcttgca
aagtatacacagggctttagtggagctgacattacagagatctgtcaacgtgcttgcaaa
tacgccatcagagaaaacattgagaaagatatcgagagggagaaaaggagaagtgagaat
cctgaagccatggaggaagacgttgaagacgaggtacctgagatcaaggctgctcacttt
gaggaatcaatgaagtacgccaggaggagtgtcagtgacgctgatatccgcaagtaccaa
gctttcgctcagacgttgcaacagtccagaggattcggttctgaattccgattttcggag
acgagcactgcagggaccactgggactgctgctgacccctttgcaacttcagctggtgga
gcagatgaagatgacctgtatagttaa
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