Solanum lycopersicum (tomato): 101246587
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Entry
101246587 CDS
T02665
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101246587
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sly01009
]
101246587
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101246587
Protein phosphatases and associated proteins [BR:
sly01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101246587
Spliceosome [BR:
sly03041
]
Common components
Common spliceosomal components
SR proteins
101246587
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
CoV_nucleocap
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
101246587
NCBI-ProteinID:
XP_004232529
UniProt:
A0A3Q7FTW0
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All DBs
Position
2:complement(62987803..62991141)
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AA seq
228 aa
AA seq
DB search
MADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGL
SSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLE
GRSITVEKSRRKRPRTPTPGHYLGLHQSARGDGYHGDRGRYRGRGDYGYRRSPRRSPYRG
GRDYSPRHSPYRGGRDYSPRRSPYAGRSRRARSRSYSPYERNYPRGYR
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtca
agatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtcc
agaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggatta
tcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaag
tcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataaca
atggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaa
ggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggt
cattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtagg
tatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggt
gggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctaga
cgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaa
aggaactaccctcgtggttatagataa
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