Solanum lycopersicum (tomato): 101246877
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Entry
101246877 CDS
T02665
Name
(RefSeq) transcription initiation factor IIB-2
KO
K03124
transcription initiation factor TFIIB
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101246877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101246877
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
101246877
Prokaryotic type
Archaeal type
TFB
101246877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
HTH_Tnp_ISL3
HTH_5
WHD_GDS1
DUF7573
DmmA-like_C
TPR_NPHP3
FtrD-like
Motif
Other DBs
NCBI-GeneID:
101246877
NCBI-ProteinID:
XP_004249237
LinkDB
All DBs
Position
10:complement(60062005..60067556)
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AA seq
311 aa
AA seq
DB search
MDAYCSDCRKSTEVVFDHSAGDMVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG
PNNPLLSDGGLSTVISKPNGTTSDFLTSSLGRWQNRGSNADRSLILAFKAIGVMSDRLGL
VATIKDRANEIYKKVEDQKSSRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATKK
EIGRAKEYIVKQLELEMGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVKKSEEFD
IRRSPISIAAAVIYIVTQLSDEKKPVKDVSLATGVAEGTIRNSFKDLYPHLSKIIPNWYA
QGQDLKNLSSP
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgtactgttcggactgtagaaagagcacagaagttgtatttgatcattcagct
ggtgatatggtttgttcggaatgtgggttagttttggaatctcattcgattgatgaaaca
tctgagtggagaacttttgctaatgagtcgggtgataatgacccggttcgagttggtgga
ccgaataatccattgctttctgatggtgggttatctacagtgatctcaaaacctaatgga
accactagtgatttcttgacatcgtctttgggtcgatggcagaatcgtgggtcgaatgct
gatcgatctcttattttggcttttaaagctattggggttatgtctgataggttgggcctg
gttgcaaccataaaggaccgagctaatgagatatacaagaaggtagaagatcaaaaatct
agtagaggaaggaaccaggatgctatattggctgcttgcctatatattgcttgtcgacaa
gaagacaagcctcgaactgtgaaggaaatttgctctgttgcgaatggagctacaaagaag
gaaattggccgagcaaaggaatacatagtgaaacaactagagctcgagatgggtcaatca
gtggaaatgggaactatacatgctggggatttcatgcgacgcttttgttcaaatcttggg
atgacaaatcaagcagttaaagctgctcaagaagcagtcaaaaaatctgaagagtttgac
ataaggagaagtcccatttcgattgctgcagcagttatctacatagtcacccagctttcg
gatgagaagaagccagttaaagatgtgtcacttgcaactggagttgctgaaggtacgatc
cggaattcattcaaggatctatacccacatctctcaaagataataccaaattggtatgca
cagggtcaggacctaaaaaacctcagcagtccttaa
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