Solanum lycopersicum (tomato): 101246918
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Entry
101246918 CDS
T02665
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101246918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101246918
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
101246918
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
101246918
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Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
RRP40_S1
CHASE5
Motif
Other DBs
NCBI-GeneID:
101246918
NCBI-ProteinID:
XP_004237511
UniProt:
A0A3Q7G4A5
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Position
4:complement(48256984..48263574)
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AA seq
200 aa
AA seq
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MTMAMEAETQELVTPGQVLGKASQLKAGKGAYVSTENGTVYASLTGFRSLIPPHSDAVDQ
RSTVEVTGHKAHGAVPKPGSVVFARVTKVMARTASADIVCVDSKSVREKFTGIIRQQDVR
ATEIDKVDMHLSFRPGDIIRALVLSLGDARAYYLSTAKNELGVVSAESAAGGTMVPISWT
EMQCPLTGQVEPRKVAKVEA
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgacgatggctatggaagctgaaacccaggagttggtcacgccaggacaagtattaggt
aaagcatcacagttgaaagctggaaagggggcttacgtttcaactgagaatggcactgtt
tacgcctctcttaccgggttccgttctcttatacctccgcattccgacgctgttgatcag
agatcaacagtcgaagttactggtcataaagcccatggagcagttcctaagcctggttcc
gttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgt
gttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcaga
gcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgt
gcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgag
ctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggaca
gaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagct
tga
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