Solanum lycopersicum (tomato): 101247106
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Entry
101247106 CDS
T02665
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101247106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101247106
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
101247106
mRNA cycle factors
Common to processing body (P body) and stress granule
101247106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
101247106
NCBI-ProteinID:
XP_004252008
UniProt:
A0A3Q7J6T2
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All DBs
Position
12:13350741..13358101
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AA seq
993 aa
AA seq
DB search
MMTIPMDSNLDHSSRERVQCLYNKNVELENKRRKAAQARVPSDPSAWQQMRENYETIILE
DHVFSEQHEIEYALWQMHYRRIEELRAHFNAAANSSGTTNGKVHPTSGPDRITKIRTQFK
TFLSEATGFYHDLMLKIRAKYGLPLGYNSDDPENQIPSSNDGNKSVELKKGLISCHRCLI
YLGDLARYKGLYGEGDSKARDFAAASSYYLQASSLWPSSGNPHHQLAILASYSNDELVAI
YRYFRSLAVESPFATARDNLIIAFEKNRQCYTQILGDTKVPSTKAVPLRTIGKGRGKGET
RQPMKDDKVEAISVQEKASSMSDIFRTFSTRYVRLNGILFTRTSLETFGEVQLVVKNDLL
KLLSSGPDEKYNFGTDAADCRLAIVRIVGILIFTVHNVNRESENKSYAEILQRSVLLQNS
FTAVFEFMGHVVERCVQLSDPTTSFLLPGVLVFVEWLACHQDVALGNEPEEKQTTARSFF
WKNCIAFFNKLMSSGFKFVDDDKDETCFFNMSRYDEEESGNRLALPEDFELRGFLPLLPA
QLILDFSRKHSFGGDGGIKEKKSRLQRIIAAGKALASVVRVGEEGIYFNSTAKKFIIGIE
PQVSGDYVHGCTMEVPKLSGIGLVNPAAGQLTVGALQPKQQLYVECEEEDEVIVFKPSAA
EKHVNGSTSNMMATEVPVSYVGAANVPPRISITSDGLGNEMGPFSAALDGLITPSALHAS
VRPPSTIANNSGQYMQPIQPNTSLWSVQQDAVMNGLASLNLIGNDRTIKSELQDRSGVFP
PATYSIPFPQSVNFSIANSIPAQVPDAAIPSNFSSLSSSVAGMDSMSVKSPSVTSTGIKK
NPVSRPLRHLGPPPGFGYVPSKVVDESSSAITIKNEHSLPPMDDYGWLDGYQLSSSNQST
GFNNSINHSTQNYVSVSKSSSSVGMASFPFPGKQVNPLRVQSGNQKGREDYQISEQLKLY
HEQPQQLKSVNQQSVALPQQHQGQSLWECRFFV
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccattccaatggatagtaatttagaccattcatctcgggagcgagttcagtgc
ctctacaacaagaatgttgagttggagaataaacggagaaaagcagcacaagctagagtt
ccttctgatccaagtgcatggcaacaaatgcgagaaaactatgaaactatcatcctggag
gatcatgttttctcagaacaacatgaaatagagtatgccttgtggcagatgcattacagg
agaattgaggaattgcgggcacacttcaatgctgctgcaaattctagtgggacaacaaat
gggaaagttcatcctactagtggaccagatcgcatcacaaagatccgaacacagtttaaa
actttcctttcagaagcaacaggtttttaccatgatttgatgctaaaaattagggccaag
tatggtcttccactgggatataactctgatgatccagagaatcagattccttcctctaat
gatggtaataagtctgtggagttgaagaaaggattgatatcctgccatcgttgtttgatt
tatcttggtgatcttgctcggtacaaaggcttatatggtgagggtgattctaaagctcgt
gattttgcggctgcttcgagttattacctgcaagcttcgtcactttggccttcaagtggt
aatcctcatcatcagcttgcaatactggcttcctattccaatgatgagctggtggctatt
tatcgctatttccgcagtcttgcagtagaaagcccttttgccactgcaagggataacttg
atcattgcatttgagaagaaccgtcagtgttacacccagatactgggggatactaaagtt
ccctccaccaaggcagtacctcttcgcacgattggaaaaggaagaggtaaaggagaaacg
aggcaaccgatgaaagatgataaggttgaagcaatctcagtccaggaaaaagcttctagt
atgtcggacatctttagaaccttctccacgagatatgttcgactgaatggcattcttttc
actcgcactagcttggaaacatttggagaagtgcagttggtggttaagaatgatctgctc
aagcttctctcttctgggcctgatgagaagtataattttggtactgacgctgccgactgt
agactggctattgtgaggattgtgggtatcctgatattcactgttcataatgtgaacagg
gaaagtgaaaataagtcttatgctgagattttacagagatctgttcttctacagaattcg
tttactgctgtttttgagttcatgggtcatgttgttgagagatgtgtccaactaagtgat
cccaccacaagcttccttttgcctggtgttttggtgtttgttgagtggttggcatgccat
caagatgttgcgcttggcaatgaaccagaagagaaacaaacgacagctagatcatttttc
tggaagaactgtattgctttctttaataagctaatgtccagtgggttcaagtttgttgat
gacgacaaggatgaaacatgctttttcaatatgagcaggtatgatgaagaagaaagcggc
aatcgtcttgcattgcctgaggatttcgaactgagagggtttctacctcttcttccggca
caacttatccttgatttttcaaggaagcattcttttggtggtgatggtggcatcaaagag
aagaaatcacgtctccagaggataatagctgcaggaaaggcccttgctagtgtggtccgt
gttggagaagagggaatatattttaacagtacggcaaagaaattcatcattggcattgag
ccccaagtgtctggtgattatgtacatggttgcacaatggaagttcccaaattaagtggt
attgggctggtgaatccagctgcagggcagttaactgtaggagctctgcagcctaagcaa
caattgtatgtggagtgtgaggaagaagatgaggtaattgtctttaagccatccgcagca
gaaaagcatgtgaatggaagcacttcaaacatgatggccacggaagttcctgtttcatat
gttggtgctgccaatgttcctcctcgcattagcataacctctgatggtctaggaaatgag
atgggcccgttttcagctgcacttgatggattgatcacgccgagtgctttacatgcaagt
gtaaggcctccctcaactattgctaataacagtggccaatatatgcagcctattcaacca
aatacttcattgtggtccgttcaacaggatgctgttatgaatggattggctagcttgaac
ttgataggaaatgatcgaactataaaatctgagttgcaagatcgttcaggagtatttcca
cctgcaacatattcgatcccttttccacagtctgtcaattttagcatagcaaatagcatt
cctgcgcaggttccagatgctgctataccatctaacttcagttcactttcatcctcagta
gctggtatggacagcatgtcagtaaagtctccgtcagtcacgtcaacaggtataaagaaa
aatccagtcagcagacctcttaggcatctgggtccacctccaggctttggttatgttcct
tccaaagtcgtggatgaatcttcatcagccataactataaagaatgaacattctcttcct
cctatggatgactatggctggctggatggatatcagctgtcttcatcaaatcagagcact
ggtttcaataactccattaatcattcaacacaaaactacgtctccgtgagcaagagcagt
agctcagttgggatggcaagttttcctttccctgggaaacaggtaaaccccctgcgtgta
caatcagggaatcagaaaggtcgggaggactaccagatatctgaacaattaaaactgtac
catgagcaacctcagcaactcaagagtgtgaatcaacaatctgttgcactgcctcagcag
catcaaggacagtctctgtgggaatgccgtttcttcgtgtga
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