Solanum lycopersicum (tomato): 101247453
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Entry
101247453 CDS
T02665
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial isoform X1
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sly03016
]
101247453
Enzymes [BR:
sly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
101247453
Transfer RNA biogenesis [BR:
sly03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
101247453
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
Motif
Other DBs
NCBI-GeneID:
101247453
NCBI-ProteinID:
XP_019071223
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Position
9:complement(4706061..4715977)
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AA seq
802 aa
AA seq
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MAVRAMNSCVIFRSAATPPLAVSRRCCCVRQLTAFSRHRNRSNSHSFLRCVPYPLSHVTV
RNYSVQNLVEMVMEELASIHKRGRVRATSELESVSTGELLEDKLKKGTLQKGLLLEFKKD
SERLLLAVALKPDGKKNWMVSDQFILLVFDDQNGITTSIKPQQVTFIVPGAENFEPTEIS
EFVQKAHDNLDPALLEFAWNELLEKNESVTVQELAEMIFGSAEPLETYCAHLLLSRDEVY
FAVLESKGLSVYGPRTANQVDELLRRKLAKEASEKEFEELIQFLRSAKQMPHYDKPPRSS
WKAEEKTWHKIESLEAFAIDSCKNDDQKKTAGMILKAMGQAKTSSAAVNLLIDIGYFPVH
VNLDLLKLNLPTDHRDEIISAAESLLSTSIDLDEADRIDLTSLKVYAIDVDEADELDDAL
SATRLQDGRIKLWIHIADPTSLVQPGSIIDKDARRRGTSVFLPTATYPMFPERLAMEGMS
LQQGKLCNAVSVSVVLRSDGSIAEYSVENSIIKPTYMLTYESATELLHLNLEEEIELKIL
SEAAALRLRWRREQGAIDTATIETRIKVTNPDHPEPSIKLYVENQADAAMRLVSEMMILC
GEVIATFGSHNNIPLPYRGQPQSNIDASAFAHLPEGPVRSAAIVRTMRAAEMDFRNPIRH
GVLGLPGYVQFTSPIRRYMDLAAHYQVKAFLCGEPLPLSAGELEGIASSVNMTTRVVRRL
SSSSLRYWILEYLRRQPKGKRYRALVLRFIKDRIAAILLTEIGIQASSWVSIGVQIGDEV
DVQVEEAHPRDDILSLKEVEAV
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcgcgccatgaacagctgcgtaattttccgttccgccgctacgccgccgctc
gccgtctcccgccggtgctgctgtgtccgtcaattaacagctttttctcgacatagaaac
cgttcgaattcacattcatttctccgttgtgtgccttatcctctcagccatgtcaccgtt
cggaactattcagttcaaaacctcgtcgaaatggttatggaagagcttgcttcgatacac
aaacgtggcagagttcgtgctactagcgagctggaatcagtaagcacaggagagctgctt
gaggacaagttgaagaaagggacactacaaaaaggattgttgctggagttcaagaaggat
tctgaaaggttgttgctagcagttgctcttaaacctgatggaaaaaagaattggatggtc
tctgatcagtttattttattggtttttgatgatcagaatgggattacaacctctattaag
ccacagcaagtgacttttattgttcctggtgctgaaaattttgagcccacagaaatatca
gaatttgtacagaaagctcatgataacttggatccagcactgcttgaatttgcatggaat
gagctacttgagaaaaatgaatcagtaacagttcaagaactagctgagatgatttttggt
agtgcggagcctcttgagacctattgcgcccacctgctgttatcaagagatgaggtgtac
tttgcagttctggagtcaaaaggtctttctgtatatggacctcggactgctaaccaggtg
gatgaacttttgcgaaggaagcttgctaaagaggcctcagagaaggagtttgaggaactt
atacagtttctacgatctgctaaacaaatgcctcattacgacaaacccccaagatcttct
tggaaggctgaagagaaaacttggcacaagatagagtctcttgaagcttttgccattgat
tcttgcaaaaatgacgatcaaaagaaaacagctgggatgattttgaaggccatgggacag
gcaaagacttcatctgcagcagtgaatctcctcatagatattgggtattttcctgtacat
gtaaatctcgatttgttaaagttgaacctcccaactgatcatcgggatgagattatatcg
gccgcagagagtcttttgtctacatcgattgaccttgatgaggctgatagaatagacctg
acttccctgaaggtttacgcgattgatgttgatgaggctgatgagcttgatgatgcattg
agtgccacaaggttgcaggacggccggattaaactttggatacatattgcagatcctact
agtttagttcagccaggaagcataatagacaaggatgcaagaagaagaggaacttcagta
ttcttgcctactgcaacatatccaatgttccctgagaggttggccatggaaggcatgagt
ctgcagcaaggaaagttgtgtaatgctgtttctgtgtctgttgtgctgcgttctgatggc
agcattgcagaatactcggtggaaaactcaatcatcaaaccgacatatatgttgacatat
gagagtgctacggagctccttcatttgaatcttgaagaagagattgaactgaaaattctt
tctgaagcagctgcactccggttaagatggcgtcgcgaacagggtgctatagacacagcc
accatcgaaacacgaataaaggtgactaatccagatcatccagagccgtcaatcaagctg
tatgttgaaaaccaggctgatgcagctatgaggcttgtttctgagatgatgatactctgt
ggggaagttatagccacttttggttctcataacaacatccctttaccataccgtggacag
cctcaatctaatatcgacgcttctgcatttgcacaccttccagaaggacccgttaggagt
gctgctattgttcgaactatgcgtgcagctgaaatggatttcaggaatcctatacgccat
ggggtgttgggacttccaggctatgttcagtttacctcccccattagaagatatatggat
ctcgcagcccattatcaggtaaaggccttcctttgtggtgaacctcttcctctctcagct
ggggagctagaaggcattgcgtcttcagtaaacatgacaaccagagttgtaaggaggctc
tccagcagcagtcttcggtattggatattggaatacttgagaaggcagccgaaagggaaa
cggtatcgtgccctggtccttagattcatcaaagaccgaatagccgcaatactgttgacg
gagattggaattcaagcttcttcgtgggtgtctattggtgtacagattggtgatgaagta
gatgtccaagttgaagaagctcatccacgtgatgatattctctctcttaaggaggttgag
gctgtatag
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