Solanum lycopersicum (tomato): 101247553
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Entry
101247553 CDS
T02665
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X2
KO
K13217
pre-mRNA-processing factor 39
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101247553
Spliceosome [BR:
sly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
101247553
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_19
TPR_7
TPR_12
TPR_MalT
TPR_16
TPR_10
Motif
Other DBs
NCBI-GeneID:
101247553
NCBI-ProteinID:
XP_004247135
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All DBs
Position
9:58707370..58727191
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AA seq
825 aa
AA seq
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MGESETVVAQTSSVTDYMSAAYSSINPDDAGAHASSDAGNAGDLATSCPNGPGESAATNV
EAGNTYSTDEVSTQQEAATAMAYDVSQDLAALANAPAGSSQVADYESSANGNTAEARDIA
AAGIAENGIAADVHGSSNMHQPEDGLALSPEEERLWSIVRTNSLDFNAWTALIEETEKMS
EGNILKIRKAYDAFLAEFPLCYGYWKKFADHEARLGSGDKVVEVYERAVQGVTYSVDMWL
HYCVFAISTYGDPDTIRRLFERGLVYVGTDYLSFPLWDKYLEYEYTQQAWSNVAAIYTQI
LQNPNQQLDRYFEGFKELVASRPLTELRTPEEAAAAAAVEAGDEQIEGEDNPGSEPSKPV
SASLKDAEELEKYITIREEMYKKAKEFDSKIIGFETSIRRPYFHVRPLNVAELENWHNYL
DFIEGGDDFNKVVKLYERCLIACANYPEYWIRYVSCMEISGSLDLADNALARATQVFVKR
QPEIHLFAAQLREQRGDITGARAAYQLVHAEISPGLVEAIIKHANMERRLGNLDDACSIY
EQAIAIEKGKEHSQCLPLLFAQYSRFCYLVSGKAEKAREILDQAVENVQLSKPLLEALIH
LESIQSLPKRVDLLDSLVDKFLVPSPENPNVASVDEREELSSIFLEFLDLFGDAVSIKKA
DDRHAKLFLRHRTSSDSKKRHAEDYIVSEKTKLAKSAVAATNPSAVGAYPGAQNQWPAGY
GAQGQTWPQAAQAQSQQWNPGYAQQAAYGAYGSYGTGYAPPQAPAASVPSSGGYGAYPST
FPAQAFPQQNYAQPAGAAAGAATAALTPAPQATTVPPTAYYGSYY
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaagcgaaactgttgtagctcaaacctcgtcagtcactgattatatgtctgct
gcttattcgtcaataaatcctgatgatgctggtgcccacgcttcttctgatgctggaaat
gctggggatctggccacttcatgtccaaatggcccaggggagtcagcagctactaatgta
gaagctggaaacacttattctactgatgaagtgtctacccagcaagaagctgcaactgct
atggcatatgacgtgagccaggatcttgcagctctagcaaatgcacctgcaggctcatcc
caagttgctgattatgaatcttctgcaaatggtaatactgctgaagcaagagacattgca
gcagctggaattgctgaaaatgggattgcagcagacgttcatggaagttccaatatgcat
cagccagaagatggcttagctttatctcctgaagaggaaagattatggagcatagttagg
acaaattctttagacttcaatgcttggactgcccttattgaggagacggagaagatgtcg
gagggcaacattttgaaaattcggaaggcttatgatgcattcttggcagaatttcctctg
tgttacggttattggaagaaatttgcagatcatgaggcacgtcttggctctggtgacaaa
gttgtggaggtctatgaacgagctgttcaaggtgtgacatattcggtagatatgtggttg
cactattgtgtttttgctataagcacttatggagatcctgacaccattagaaggttattt
gaaagaggattagtgtatgttggaacagactacctgtcctttccactttgggataagtac
ctggagtatgagtacacacagcaggcttggtcgaatgttgctgctatctacacacagata
ttgcagaatccaaatcagcagcttgatcgctattttgaaggtttcaaggagttggtggct
agtaggcctctaacagagttacgaactcctgaagaagctgcagctgcagctgcagtagaa
gctggggacgaacagattgagggtgaggataatcctggttctgagccttctaaacctgtt
agtgcaagcttaaaagatgccgaggagttggagaagtatatcaccattagagaagagatg
tataagaaagctaaagagtttgattctaagatcattggttttgaaacatctataaggagg
ccatattttcatgtgaggcctctgaatgtcgcagagcttgaaaattggcacaattatctt
gactttatagaaggaggagatgacttcaataaggtggtcaagctgtatgagagatgtttg
attgcgtgtgccaattatcctgaatattggattcggtatgtttcttgcatggaaataagt
ggaagtttggatcttgccgataatgcccttgctcgtgccactcaagtctttgttaagagg
caaccagagattcacctttttgctgctcaattgcgggagcaacgtggcgatattactggt
gctcgagctgcatatcaacttgtgcatgctgaaatatcacctgggcttgtagaagcaata
attaagcatgcaaacatggaacgtcgacttgggaatcttgatgatgcctgttccatatac
gaacaagctattgccattgaaaaagggaaggaacactcacagtgtctgccattattgttt
gcacagtactctcggttttgttacttggtttctgggaaggcggaaaaagctagggaaatt
cttgatcaagcagttgagaatgtccagctgtcaaaaccacttctggaggcactaatccat
ttagaatccattcagtcactcccaaagagagtagatttgttggattcattggttgataag
ttcttagttccatctcctgagaaccctaacgttgcaagtgttgatgaaagagaggaatta
tcaagcattttcttggagtttctcgatctttttggtgatgcagtctcaattaagaaggct
gatgatcggcatgcgaaactcttcttacgccatagaacttcttcagattcaaagaaacgt
catgctgaagattatatagtttctgagaaaacaaagttggcaaagtctgctgttgcagca
accaacccttcagcggttggtgcatatcctggagcacagaatcaatggcctgcaggttat
ggtgcacaaggtcaaacctggccacaggctgcacaagcccaatcgcagcagtggaatcct
ggttatgcacaacaggcggcatatggtgcttacggcagttatggaactggctatgcacct
cctcaagcgcctgcagcatcagtgccctccagtggtggttatggtgcttatccttcaaca
ttcccagcccaggccttccctcagcagaattatgcacagccagcgggcgcggctgcaggc
gctgccactgccgctttgactccagcaccacaagctacaactgttcctcctacagcatat
tacggcagttactattga
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