Solanum lycopersicum (tomato): 101247633
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Entry
101247633 CDS
T02665
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101247633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101247633
03012 Translation factors [BR:
sly03012
]
101247633
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101247633
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101247633
Translation factors [BR:
sly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101247633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_C
Ank_5
HA2_N
ATPase
Ank_2
nSTAND3
AAA_19
AAA_22
ABC_tran
Ank_3
PhoH
AAA_23
Rad17
AAA_7
Motif
Other DBs
NCBI-GeneID:
101247633
NCBI-ProteinID:
XP_004243616
UniProt:
A0A3Q7H9M1
LinkDB
All DBs
Position
7:complement(60112769..60126669)
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AA seq
1199 aa
AA seq
DB search
MASTAPSSSSSGFGKKRQKKGQKQQEVTNVAESTRIRVAQVLEQFRVSNDEVYTFESNLS
NRDRAAVHMLCRKMGMKSKSSGRGDQRRISIFKTKQNTDTMKGKDVLSCFKFSEEAKYAL
QDLFTRYPPGDGETNEPVVGKHSKKFDKLRGKKDDMFCKPVMSTSEIAKRVESFASRIEK
SPNMRQITLQRSKLPIAFFKDAITSTIESNQVVLISGETGCGKTTQVPQFILDHMWGKGE
TCKIVCTQPRRISAISVSERISAERGESVGDTVGYKIRMESRGGKQSSIMFCTNGILLRV
LITNGSASFNKEAPGKMGKDPISDITHIIVDEIHERDRYSDFMLAILRDLLPSYPNLRLV
LMSATLDAERFSKYFGGCPVIRVPGFTYPVKTFYLEDVLSIVKSTKNNHLDSTSSTVMPE
ESILTEEYKVALDEAINLAFSDDDLDPLLDLISSEGGPKIFNYQHSLSGVTPLMVLAGKG
RVGDICMLLSFGADCHLHANDGKTALDWAEQENQTQVVEIIKEHVEKSSSSCEEQQHLLD
KYLSTVDPELIDDVLIEQLLKKICIDSEDGAILVFLPGWEDINRTRERLRASHYFNDQSK
FSVIPLHSMVPSVEQKKVFRHPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYD
PYNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPIEE
LCLQVKLLNPDCKIEEFLQKTLDPPVYETIRNAIIVLQDIGALSFDEKLTDLGERLGSLP
VHPLTSKMLLISILLNCLDPALTMACASDYRDPFTLPMLPNEKKKAAAAKAELASWYGGR
SDQLAVVAAFEGWKSAKETGQESRFCSKYFLSSGTMHMLSGMRKQLASELLRNGFIPGDG
SSCNLNAQDPGILHAVLVAGLYPMVGRLLPPLKNNKKSVIETAGGDKVRLSPHSTNFKLS
FQKFYDQPLIAYDEITRGDGGLLIRNCSVIGPLPLLLLATEIVVAPGNEDDDDDNDDDES
DYEDADEDNGEEGNIKADLSEAHQGEKIMSSPDNTVKVIVDRWIPFESTALDVAQIYCLR
ERLAAAILFKVTHPGKVLPEVLAASINAMGWILSYNGMSGISLPHEPVDSLTTMVGATEI
GQSDPGWNNRMDMNPNIRHQHPNMHQQRGGGIHVSKGSSVHRGTIQRGHSKRKRGNGPY
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacagctccatcatcatcatcatctgggtttgggaagaagaggcagaagaaa
ggccaaaaacaacaagaagttaccaatgttgcagaatccactcggattcgggttgcccaa
gttctcgaacagtttcgtgtttctaatgatgaagtatacacatttgaatcaaacctttca
aaccgcgatagagctgcagttcatatgttatgccggaaaatgggaatgaagtcaaaaagt
tctgggcgtggggatcaacgtcgtatatcaattttcaagactaaacagaacacggacaca
atgaaaggaaaggatgtgctaagttgttttaaattttcggaggaggcaaaatatgctcta
caggatttatttacgcgatatccacctggtgatggggagacaaatgaaccagtagtcggg
aaacacagtaagaaatttgataaattacgaggaaagaaggatgatatgttctgtaaacct
gtgatgagcacgtctgaaattgcaaaaagggttgagtcatttgcgtcaagaatagaaaaa
agcccaaacatgagacagattacattacaaaggtctaagcttccaattgctttcttcaag
gatgctattacatcaactatagaatctaatcaggtggtcttgatctctggtgaaactgga
tgcgggaaaactacacaggtccctcagtttattttagatcatatgtggggtaaaggtgag
acatgtaaaattgtatgtactcagccacgacgaatttctgccatatcagtttctgagaga
atttctgctgaaagaggcgaaagtgttggagatactgttggttacaagatacggatggaa
agcagaggtgggaagcagtcatcaatcatgttttgtaccaatgggattctacttagggtc
ctgattaccaatggaagtgccagcttcaacaaggaggctccggggaaaatgggcaaggat
cccatttctgatataacccacatcattgtggatgaaattcatgagagggatcgctactct
gatttcatgctcgctattctcagggacttgcttccttcatatccaaatttgcgtttggtc
ctgatgagtgctacactggatgctgaacgtttttcaaaatactttggtggctgcccagtt
atccgagtccctggatttacttatcctgtaaaaacattctatcttgaggatgtactttct
attgtaaagtcaactaaaaataatcaccttgactccacctcatccactgtcatgcctgag
gaatcaatattaacagaggagtacaaagttgccttagatgaagcaattaatctggctttt
tcagatgatgatctggatccccttttggatctaatatcttctgaagggggaccaaagatt
ttcaattatcagcattctttgagtggagtgacgccattgatggttttagctggaaaaggc
cgcgttggtgacatttgcatgctcctttcttttggtgctgactgccatttacatgctaat
gatgggaaaactgctctagattgggctgagcaggagaatcagacacaagttgttgaaata
attaaggaacacgtggagaaatcatcttccagttgtgaggagcagcaacatttacttgac
aaatacctatcaacagttgaccctgaactgattgatgatgtccttattgagcaactatta
aaaaaaatatgcatagactcggaggacggggccatccttgttttccttcctggttgggag
gacattaacagaacacgagagagattgagagcaagccactatttcaatgatcagtctaag
ttttcagtgatccctctccattctatggttccttctgtggagcaaaagaaggtttttaga
caccctcctccaggctgccgcaaaatcgttctttcaactaatattgctgaaactgccatt
accattgatgatgttgtttatgtaatcgacagtggacgaatgaaagaaaaaagttatgac
ccttataataatgtatctactcttcaatcttcatgggtctcaaaagcaagtgcaaagcaa
agagaagggcgtgctggtcggtgccagccagggatttgttatcatctttattcaaaactt
cgagcagcttcattgcctgatttccaggttcctgagattaagaggattcctatagaggaa
ctatgtcttcaggtcaagcttcttaaccctgattgcaagatagaagaattcctgcagaag
acacttgaccctccggtttatgagaccatacgtaatgcaatcattgttcttcaagatatt
ggggcattgtcatttgatgagaaacttacagatcttggagaaaggctaggatctttacca
gttcatccgcttacaagcaagatgcttttaatttccatcttattgaactgccttgaccca
gcattgactatggcttgcgcttctgactatagagatccatttaccctacccatgttgcca
aatgagaagaagaaagctgcagctgcaaaagctgagttagcctcatggtatggcggaaga
agtgatcaattagcagttgtggctgcatttgagggctggaaaagtgcgaaagaaactggt
caagaatcgaggttttgttctaagtactttttatcttcaggcactatgcatatgctatca
ggaatgcgtaaacaacttgcatctgaactgttgaggaatgggtttattcccggagatgga
tcttcctgtaaccttaacgcacaggatccaggcatactacatgctgttcttgttgctggt
ttgtaccctatggttggaagactgctcccgcctttgaaaaataacaagaagtctgtcatt
gagactgcaggtggtgataaagttcgattaagccctcattctactaacttcaagctttca
ttccaaaaattctatgatcaaccactaattgcatatgatgagataactcgtggtgatgga
ggtctgcttataaggaattgtagtgtcattgggccactcccactgttattgctggcaaca
gagattgtagtggctcctggaaatgaagatgatgatgatgacaatgatgatgacgaaagt
gattacgaagatgctgatgaggacaatggcgaggaaggcaatattaaagcagatctgtca
gaagcccatcaaggagagaaaattatgtcttcacctgataatacagtgaaggtcattgtt
gatagatggatcccttttgagtcaacagctcttgatgttgctcaaatttactgcttgaga
gagaggttagctgcagcaattttatttaaggtcacacatcctggaaaagttcttcctgag
gttcttgcagcctctataaatgcaatgggttggatcttgtcgtacaatgggatgtcagga
atatcattgccgcatgagcctgtggactcacttactacaatggttggtgctactgagatt
ggtcagtctgatcctgggtggaataacagaatggatatgaatcctaacatccggcatcaa
caccccaatatgcatcagcaaagaggaggtggcattcatgtatcaaagggatcgtctgtg
catagaggaaccatccaaagaggtcattctaagcggaaacgtggaaatggaccttattga
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