Solanum lycopersicum (tomato): 101247785
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Entry
101247785 CDS
T02665
Name
(RefSeq) chromatin structure-remodeling complex protein SYD isoform X1
Organism
sly
Solanum lycopersicum (tomato)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
ResIII
DEAD
DEAD_2
Motif
Other DBs
NCBI-GeneID:
101247785
NCBI-ProteinID:
XP_010313211
LinkDB
All DBs
Position
11:54109982..54141418
Genome browser
AA seq
3327 aa
AA seq
DB search
MTNPNNVELEAAKFLHKLIQESKDEPTKLATKLYVILQHMRSSGKESSMPYQVISRAMET
VVKQHGLDIEALMSSRLPVSAAAQAGEAASSQVAGSSQRPGVTRDSKANFLGNEMGSGPS
GSGHGVYQASAPHISGTGVKVPVMASPASNSSQPLEAGISSPMQFGSPSIDNHGYAAKLH
KDGSTEPYSGPTSADLVAGRTAVGRAIEHEGGSNMLGNAGKISQGGMPNNVPEKSILRSE
TIRDAGMLSVAAQAPVSTMPFKEHHLKQLRAQCLVFLAFRNGLMPKKLHLEIALGNFYPK
EDRRELVDHKGREQLVTDQGSASEVTRTFGGAGETDRISSGPTPSGILTDTNSSMEAENA
NLMEDKNGQLDPSEHADERRPQRKMRMIQDAEMPIQDAIESQASALRGVPTDPKSFPPYN
HENAPANTEQLGMFPQASSVMGTSKQMKPDLSGRSGTEASKVSPTASANTHGSGLLMRDN
HTGQSQNLVDSNAQGNRHADSNLPSLPLRQQWKSVPGVINQSPTMMQVKDSNITLKNLSQ
VQETDQEDDNISASTDRLSSPRHTMLEKWILDQRKRKLISEQKWSKKQQKTEERIAASAE
KLKESVSSSEDISAKTKSVIELKKLQLLELQRRLRSEILYDFFKPVATDMERLKSIKKHR
IGRKSKQFERYEQRMKEERQKRFRERQKEFFSEIEVHRERLEDVFKMKRERWKGFNKYAK
EFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLG
SKLKEAKSIARKFETDVGDNRNSGVVEEDEIDFGDEDETDQAKHYLESNEKYYLMAHSVK
ETITEQPSSLKGGKLRGYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLMCYLMET
KNDRGPFLVVVPSSVLPGWESEINFWAPDMLKIVYSGPPEERRKLFKERIVHQKFNVLLT
TYEYLMNKHDRPKLSKVHWHYIIIDEGHRIKNASCKLNADLKHYRSNHRLLLTGTPLQNN
LEELWALLNFLLPNIFNSSEDFSQWFNKPFESGDSSPDEALLSEEENLLIINRLHQVLRP
FVLRRLKHKVENELPSKIERLVRCEASSYQKLLMKRVEDNLGAFGTSKARSVHNSVMELR
NICNHPYLSQLHVEEVHELVPKHYLPTFVRICGKLEMLDRLLPKLKATDHRVLLFSTMTR
LLDVMEDYLCWKQYKYLRLDGHTCGGDRGALIDKFNQPNSPFFIFLLSIRAGGVGVNLQA
ADTVIIFDTDWNPQVDLQAQARAHRIGQKKDVLVLRLETVQTVEEQVRAAAEHKLGVANQ
SITAGFFDNNTSAEDRREYLESLLRESKKEEAAPVLDDDSLNDLIARSEPEIDIFESVDR
RRREEEMEIWKKLCLESGTQSSELIPPLPSRLLTDDDLKPFYEAMKISDKPVVAPSPGLK
RKGQSLGGLDIQHYGRGKRAREVRSYEEQWTEEEFEKMCLAESPQSPSLKEEIQEKNSPS
VSGNCPDPVVANSELQTRAQYQPPLQHPVQELPQQHIGPIIQQSPVTVTPPSKRGRGRPR
RTAIVAEISPSPVVISAIAASVKVDSNTIAENSSTSQAISGPVSVSFPCASSIESTSATI
LQNVTVVAPSHQSIAPSLAVVSQSGPPCPPTSGQGRGRGRGRGRGRGRKPQTGGEAPGRR
GKQQNVTAEAFPAPPTQAVSEPVSAAQGVSVMSSTHHMPATPPAVGEPDVPQVVAGLGSK
NLGHAPVSMRDASKELNSVVPLATSSSSKDLTPVSTVSVVPSSAASQDPSSISPPGVLQS
SSRNHSDHLSLSAAQTEATLQVNPISVVPHSSPSAGKETSSVSPVPLHSLTSKDSDSVLP
SLVPESSSARVELSSDFPLPAVAPSSSIGHDSLCDSSNLKSTCQQESGAVTAHTSDPVPP
LPVISSVSQYSTPPTALKPGRGRGRKAQTGSEAPRRRGKRQDLVTAAVTEGLSVQDPKLI
EPPQKRTRLSVGRKPTTRSKRENESQQVVDQSVASQKTPDFADGEIPKNMVSSEVNPHNS
AINRDESQSHAIPVPSQMNDNLNGDVATAEEDLDDAQQKENVVQSVTSQSCSSPHVEPQI
NTVNTDNSPSQEQTAIVQSDASQKIPYPGTGQIPQAMACSEVELHRNAIKSDISQSSGDV
ASCEVAATKEVLSEDQQTMKVQSAASQTPSVHSVGKIPEDIGEVATTKEVLTEDQQTMEV
QSPASQTRSVHSVGKMPEDIVSNEVLPQCDAIQTDASQSHVTLASSGSMAPVIDCPVEKS
ESDSKGDDGEKTETNSIDGSNMEVPVGALELTSSDDLNKSGDAEGKTSSSLSGVLPTSSE
LVPRPSANTEVYLGSVGSGKVSFNSGSTQSLSECVSAKTDVEQLKTEDCPLDKSFVSKAE
GGSTEHLAGGILGKEQETGVTMEETVVSPAVETDNLNMKGITSFASSSTVAESLVDEPPV
CGSYEQGEDKLEKAAEGTHSDKGAMAEVSEQDKLSVNVSLETTKGLSRVEKEKYRIPETF
EKQVNVAESLTEECGKDLAAHGPEMKDSDVSEVAPSPRNESQSSFTVGTSQRTFEEQVNV
DESLTGECGGDLAADSPEIKDSDVSEVAPSPRNESQSSFTVGTSQSEPELQAIAESNLHP
SISETSPSTESGAQKESLSPRLASNAETVEALTETFASRHDTNYVADLQGNLSFDVKDDI
SNSEIDVSQLCPADGSSENHPELEQVVVEDVRTDICEESASDVVDDIVLRQTENADGQCH
DGLSVETHESKRAEDKVDVLNGELNKHLSSTIAGTSKKVADLELVAEANTGKINDGSVDT
GQVADKSEDMAVRDLTVEGQESKETDAAGDTSTSKNEVESQSAVVENIGSKSVASGEVTA
AELLIEGSEHLHVHAAGDTSTSKNEVESQSAVVENIGSKSVASGEVTAAELLIEGSEHLH
VLDHAIEVQGNKAFDATRDASESNSELNETQPGGTYQIVSELQFVAEQDSETMNKKNTLP
DATAVEPQPAVSENLSIRNPAHQGPKNQTSDSTEDFSTSNNELNESQPKAADGTSEIAAE
SHLVSKQNVEIHVEVATGDVIADNAAVVKSENFPSIDVAVEEKGKKESDVTCDISDSELK
EPKTSQTTTEVNTSTICEESGMTDKDVSAEKAAVGKSENFPSIDVAVEEKGKKESDVSDE
ISDSELKEPKTRQSAIQVKTPIVCEELGMTDKEVAPLEVETPFRDLSGSSGRDLAVEEQE
KEKSAASKNVSSPENEEHKCIPGARAADNGAESQLVAERDSETVLNKEVFSGKEEISSIK
LAGDEDVPTAIEYGDQELSSATGAGDD
NT seq
9984 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatccaaataatgttgagctggaggcagcaaagtttctccataagcttattcaa
gaatctaaggatgagccgactaaattggctacaaagctttatgtgattttacaacatatg
agatccagcgggaaggagagctcaatgccttatcaagtaatatcaagggctatggagact
gtcgtcaagcaacatggtcttgacattgaagctttaatgtcctcacgtcttcctgtgtct
gctgcagcacaagcaggagaagctgcatcatcacaagtagctggatcttcacagaggcca
ggggttactagagactccaaagcaaattttctgggaaatgagatgggtagcggtccaagc
ggcagcggacatggtgtttatcaagcatctgcaccccacataagtggtacaggtgtcaaa
gttcctgtaatggcgtctcctgcttcaaattcatctcagccactagaggcaggaatttca
agtccaatgcagtttggaagtccttcaattgataatcatggttatgctgcaaaattgcac
aaagatggaagcacagaaccttactctggtcccacctcggctgatcttgttgctggcaga
actgcagtgggaagagcaatagagcatgaaggaggatctaatatgttaggaaatgctggc
aagatcagtcaggggggcatgcccaacaatgtcccagagaagagtatacttagaagtgaa
acaatcagagatgcagggatgttgtctgtcgctgctcaggctcctgtatctaccatgcct
ttcaaagaacatcatttgaaacagcttagagcacaatgtcttgtgtttttggcttttagg
aatggtttaatgccaaagaagcttcatcttgagattgcactcggaaacttctatccgaaa
gaagatcgcagagaattggttgaccataaaggaagggagcaactggttactgaccaaggc
agcgcatctgaagtcacacggacatttggaggagctggcgaaactgacaggatttcttct
ggtcctacaccttctggaattcttaccgatacaaattcatcaatggaggctgagaatgca
aacttgatggaagataaaaatggtcagcttgatccttctgagcatgctgacgaaaggaga
ccccaaagaaaaatgagaatgattcaggatgctgaaatgcccatccaggatgctatagaa
tcacaggcatctgctcttagaggagttccgactgatccgaaatcctttcctccctataat
catgagaatgctcctgcaaatactgaacagcttggaatgtttcctcaagcttcctctgtt
atgggcacaagcaagcaaatgaagcctgatctgagtggtaggagtggaactgaggcttca
aaggtatcaccaactgcctccgccaatacccatggatcgggtctgctaatgagagataat
catactggtcagtctcaaaatcttgttgatagcaatgctcaaggaaatcgacatgctgat
agtaacttacctagtttacccttgaggcaacagtggaaatctgttcctggagtaattaat
cagagtcctacaatgatgcaagtgaaggattcaaatataacgctgaaaaatctgtcacaa
gtgcaagaaacagatcaagaggatgataatatttcagcatccacggataggttatcatct
ccaaggcatacaatgctggagaaatggattctggatcaacggaaaaggaagcttattagt
gaacagaaatggtcgaaaaaacagcaaaaaacagaagaaagaattgctgcttctgctgag
aagttgaaggaatctgtgagctcctctgaggatatctctgcaaaaacgaaaagtgtcatt
gagctgaaaaagcttcaattgctggaactgcagcgtcgcttacggagtgaaattctctat
gattttttcaagccagtagcaactgatatggagcgtttaaaatcaatcaagaagcacaga
attgggaggaaatcaaagcaatttgaaagatatgaacaaagaatgaaggaggaacgtcaa
aagagatttcgtgagagacagaaggagtttttcagtgagattgaagttcatagggaaaga
ttggaagatgtatttaaaatgaagagagaacgctggaaaggtttcaataagtatgcgaag
gagttccataaaaggaaggaacggatacatcgtgagaagattgacaggatccaacgtgag
aagattaatttgctgaaaatcaatgatgttgagggataccttcgaatggttcaggatgca
aagtcggatcgtgttaacaaactactaaaagagacggaaaagtacctccaaaagcttgga
tccaaattaaaggaggccaaatcaattgcaagaaaattcgagactgacgtgggtgacaat
agaaactcaggtgtggttgaggaggatgaaattgactttggtgatgaggatgaaacagac
caggctaagcattacttggaaagcaatgaaaaatactatttgatggcacatagtgtaaag
gaaaccatcacagagcaacctagttctctcaaaggtggaaaattacggggttaccaaatg
aatggattgcgatggttggtttcactctacaataaccatttgaatggaattttagctgat
gaaatgggcctcggtaaaactgttcaggttatatcccttatgtgttacctgatggaaacc
aaaaatgacagaggaccttttctggtggtagtgccatcctctgtcctacctggatgggag
tcagagataaacttttgggcaccagatatgctcaagatagtttattctggaccaccggaa
gagcggaggaagcttttcaaggaaagaattgttcatcaaaagttcaatgttcttttgacg
acatatgagtatttaatgaacaaacatgatagaccaaaactaagtaaagtacattggcac
tatatcataattgatgaagggcatcgcataaaaaatgcttcttgcaagttgaatgctgat
ctgaagcactaccgcagtaatcataggttactgttgacgggcactcctcttcagaacaat
cttgaggagctctgggcactacttaacttccttttgccaaatatcttcaattcatcagaa
gacttctcacaatggtttaacaagccatttgagagcggtgatagctcacctgatgaagct
ttgctctcagaggaggaaaatcttttgatcattaaccgtctgcaccaagttttgcgtcca
tttgttcttaggagattgaaacacaaggttgagaatgaattgccttcaaagattgaaaga
ctggttagatgtgaagcttcttcgtatcagaagcttttgatgaagcgagtggaagacaac
cttggtgcattcggaacttcaaaggctcggtcagtccacaattctgttatggagctgcgc
aacatttgcaatcatccatatcttagccagcttcatgtggaggaggttcatgagctagtt
cctaagcattatctgccaacgtttgtgaggatttgtgggaagcttgagatgttggacaga
ttactgcctaaacttaaggcaacagatcaccgggtcttgctcttctcaacaatgaccagg
ctgcttgatgtaatggaagattatctctgctggaagcaatataagtaccttcgcttggat
ggacatacttgtgggggtgacagaggtgcccttattgataaattcaatcagcctaattct
cccttctttatatttctgttgagtattcgtgctggaggtgttggagtaaatcttcaagct
gctgatacagttataatttttgacacagattggaatcctcaggttgatcttcaagcacaa
gcaagggctcataggataggtcaaaagaaggatgttcttgttcttcgattagaaacggtc
caaactgttgaggaacaagttagagctgctgctgagcataaactgggagttgctaaccaa
agcattactgctgggttctttgataataacacaagtgcggaagaccgaagggagtacttg
gagtccctcttgcgagaaagtaaaaaagaggaagctgcacctgttcttgatgacgattcc
ttgaatgatcttatagcacgaagtgagccagagattgatatatttgagtcagttgacagg
agaaggcgtgaagaagagatggaaatctggaagaagttatgcttagaaagtggaacacaa
agttcagaactcattcctcctttgccttctcgacttcttactgatgatgacttgaaacca
ttctatgaagcaatgaaaatatctgataagccagttgtggctcctagccctgggttaaaa
aggaagggtcagagtcttgggggtcttgatatccaacactatggacgtgggaaaagagca
agagaggttcgttcatatgaagagcaatggactgaagaggaatttgagaaaatgtgcctt
gctgagtctcctcaatcacctagtctaaaggaagaaattcaagaaaagaattccccttca
gtctctggcaactgtcctgaccctgttgttgccaatagtgaattacaaacccgagcacag
tatcagcctcctctccagcaccctgtgcaagaacttccccaacaacatataggacccata
attcaacaaagccccgtgactgtgactccgccatctaaacggggccggggaagaccaagg
aggacagcaatagttgctgaaatttcaccgtccccggtcgttatttcagcaattgcagct
agtgtaaaggtggatagcaataccattgcagaaaatagttctaccagtcaggcaatttct
gggcctgtttcagtgtcttttccttgtgcttcttccatagaaagtaccagcgcaaccatc
ctacagaatgtaactgttgttgcgcccagccatcagtcaattgcaccttctcttgctgtt
gtttctcagtctggtcctccttgccctcctacaagtggacagggaaggggccgaggtaga
ggccgaggtcgaggtcgaggtcgaaagcctcaaactggaggagaagctccagggcgtaga
ggaaaacaacagaatgttacagcggaggctttccccgcccctccaactcaagcagtaagt
gagcccgtctctgcagcgcaaggtgtgagtgttatgagttctactcaccatatgcccgca
acacctcctgcagtgggtgagcctgatgtgccccaggtggtggcaggtttgggttcaaaa
aaccttggtcatgctcctgtttccatgagagatgctagtaaggaactgaattcggttgtg
cctcttgcaacatcttcctctagcaaagacttaacccctgtttcgactgtttctgttgtt
ccatcgtctgctgccagtcaggaccctagttcaatttcacctccaggtgtccttcaatca
tcctcgagaaaccattcagaccatctttccctctctgctgcccagaccgaagctactctg
caggtgaatccaatttcagtagttcctcatagttcaccttcagctggcaaggaaacgagt
tccgtgtcacctgttcctcttcattcattaacttcaaaggactccgattcagttttacct
tctcttgttcccgaatcatcatctgctcgcgtggaactaagttcagatttccctcttcct
gctgttgcaccctcttccagcataggtcatgattctttatgtgattcttctaacttgaag
agcacttgtcaacaagaatctggtgcggtaactgctcatacttctgatccagttccacca
ttgcctgtgatttcgtcagtttcacagtatagtactcctcccactgcacttaagccaggt
agaggacggggacgcaaggctcaaactggaagtgaggctccacggcgcagggggaagaga
caggatttggtcactgcagctgttactgaagggttaagtgttcaggatccaaaattaatt
gaacccccacaaaagagaaccaggttatccgtagggaggaagcccactacaagaagcaag
cgtgagaatgaatctcaacaagtagtagaccaatcggttgcatctcaaaagactccagat
tttgctgatggagaaatccctaagaatatggtttctagtgaagttaatccacataacagt
gcaatcaacagagatgaatctcaatcccatgctattccggttcctagtcaaatgaatgat
aatctaaatggtgacgttgctactgctgaagaggatctcgatgatgctcagcaaaaggag
aatgtggtccaatctgttacatctcaaagttgctctagtcctcatgttgagccacagatt
aacacggtcaacactgataattctccttcccaggaacaaacagctattgtccagtcagat
gcttcacaaaagattccatatcctggcacaggacaaatccctcaagcgatggcgtgttct
gaagttgagctacatcgcaatgctatcaaatccgacatatcacaatccagtggcgatgtt
gctagttgtgaagttgccgcaacaaaggaagttcttagtgaggatcaacaaacaatgaag
gttcagtcagctgcatctcaaacgccttcagttcactctgttgggaaaattcctgaagat
attggtgaggttgccacgacaaaggaagttctcactgaggatcaacaaacaatggaagtt
cagtcaccagcatctcagacacgttcagttcactctgttgggaagatgcctgaagatata
gtgagtaatgaagttctgccacagtgtgatgctatacaaacagatgcatctcaatcccat
gtcactcttgcctcttcaggatcaatggctccggttattgattgcccggttgaaaagagt
gaaagtgattctaagggtgacgatggtgaaaagactgagactaattctatagatgggtca
aacatggaagtccccgttggagctttggagcttacatcatctgatgatctgaacaagagt
ggagatgcagaagggaaaactagcagcagtttaagtggggtccttcccacaagttctgag
ttagttccccgtccaagcgcaaatacagaggtatatctgggttccgtaggctctgggaaa
gtaagttttaattcaggttcaactcaaagcctgtctgaatgtgtgtccgcaaaaactgat
gttgaacagttaaagactgaggattgtcctctggataaatcatttgtttctaaagctgag
ggaggcagcactgagcatctcgctggtggcatacttggaaaagaacaggaaaccggagtc
accatggaggagactgttgtttcacctgctgtggagactgacaatctgaacatgaaggga
atcacatcatttgcttcttcatctactgtggcagaatctttagtggatgaacctccagta
tgtggatcttatgaacaaggtgaggacaaacttgaaaaagcagcagaaggaacacattcc
gataaaggtgcaatggccgaggtttctgaacaagataagttatcagttaacgtgtcattg
gagactactaaaggcttaagtagggtggagaaagaaaagtatagaattccagaaactttt
gagaagcaagttaatgttgctgaatccctaacagaagaatgtggaaaagatcttgcagca
catggtccagaaatgaaagattctgatgtaagtgaggttgcgccaagccctagaaatgag
tcccaatccagtttcactgttggaacatctcaaagaacttttgaggagcaagttaatgtt
gatgaatccctaacaggagaatgtggaggtgatcttgcagcagacagtcccgaaataaaa
gattctgatgtaagtgaggttgcgccaagccctagaaacgagtcccaatccagtttcact
gttggaacatctcaaagtgaacctgaactacaagcaattgctgaatcaaacttgcatccc
agcatttccgagacttctcccagcacagaatctggtgcccagaaggaatccctttcacct
aggcttgcttcaaatgctgaaactgttgaggctctaacagaaacgtttgccagccgtcat
gacacgaattacgtagctgatttacagggtaacttgagttttgatgtaaaggatgatatt
tctaattctgaaattgatgtatctcaactctgtccagctgatggatcatctgagaatcac
ccagaattagaacaggttgtggtggaagatgtgagaactgacatctgtgaggagtctgcc
tcagatgtagttgatgatattgtactgcgacaaacagagaatgctgacggtcagtgtcac
gatggtttgtctgttgagactcatgagagcaaaagagctgaagataaggttgacgtttta
aatggtgaattaaataaacatctatccagcacaattgctggaacatccaaaaaggtggca
gatctggagttagttgccgaagcgaacacagggaagataaatgatggctcagtagataca
ggtcaggtggcagataagtccgaggatatggcagtccgagatcttactgtggaaggacaa
gagagtaaggaaactgatgccgcaggagatacttcaacatcaaaaaatgaggtggaatca
caatctgctgttgtagaaaatataggaagcaagtcagtagcatcaggggaggtaacagct
gctgaacttctgatagaagggtctgagcatttgcatgtccatgccgcaggagatacttca
acatcaaaaaatgaggtggaatcacaatctgctgttgtagaaaatataggaagcaagtca
gtagcatcaggggaggtaacagctgctgaacttctgatagaagggtctgagcatttgcat
gtcctagaccatgcaattgaagtacaaggtaacaaagcatttgatgccactagagatgct
tcagaatcaaattctgagctaaatgaaactcaacctggcggaacatatcaaattgtgtca
gagttacagtttgttgcggagcaagactctgagacaatgaacaagaagaatactttgcct
gatgctacagctgttgagccccaaccagctgtctctgagaatttgagtattcgaaatcct
gcacatcaaggaccaaagaaccaaacatctgattcaactgaagatttttcaacttcaaat
aatgaacttaatgaatctcaaccgaaagctgcagatggaacttctgaaatagcagcggag
tctcatttggtttccaaacaaaacgtagaaattcatgtggaggttgctacaggggatgtt
atagctgataatgctgctgtagtgaagtctgaaaattttccatcgatagatgttgctgtt
gaagaaaaagggaagaaagaatctgatgtaacatgtgacatttctgattctgaactcaaa
gaacctaaaaccagtcaaaccacaactgaagtgaacacaagtacgatatgtgaggagtca
ggaatgaccgacaaggatgtttcagccgagaaagctgcagtaggtaagtctgaaaatttt
ccatcgatagatgtggctgttgaagaaaaagggaagaaagaatctgatgtatcagatgaa
atttctgattctgaactcaaagaacctaaaaccagacaatccgcaattcaagtgaaaaca
cccatagtatgtgaggagttgggaatgactgacaaggaggtagctccacttgaagttgaa
actccattcagagatttgtctggttcttctggcagagacttggcagttgaagaacaagaa
aaagagaagtctgctgcaagtaaaaatgtttctagccccgagaatgaagagcataaatgt
attccaggtgcaagagctgctgataatggggcagaatcacaattggttgctgagagggac
tctgagacagttctgaacaaggaagtattttcaggcaaagaagagatctccagtatcaag
ctagctggtgatgaagatgtgccaactgctatagagtatggtgatcaagaactgtcatct
gctacaggggctggtgatgattaa
DBGET
integrated database retrieval system
