Solanum lycopersicum (tomato): 101247956
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Entry
101247956 CDS
T02665
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sly03009
]
101247956
04121 Ubiquitin system [BR:
sly04121
]
101247956
Enzymes [BR:
sly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101247956
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
101247956
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101247956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
FANCL_C
zf-ANAPC11
zf-C3HC4
zf-C3HC4_2
zf-RING_16
HEAT_GCN1
ParcG
RINGv
zf-RING-like
IBR_1
C1_1
Motif
Other DBs
NCBI-GeneID:
101247956
NCBI-ProteinID:
XP_010326253
LinkDB
All DBs
Position
9:complement(35157443..35173755)
Genome browser
AA seq
1874 aa
AA seq
DB search
MGRPKGDGARSKSRPSSSSLAASLLPQGSTPVGFGGYMGCSRVDSTEDSPPFLDIDSEVA
QHLKRLSRKDPTTKLKALTSLSQLFQQKTAKEIIPITPQWAFEYKKLLLDYNREVRRATH
VTMTNLVGVVGRDIAPYLKSLMGPWWFSQFDSAYEVSQAAKRSFQAAFPAQDKRLDVLIL
YTSEIFRYIEENLKLTPQSMSDKNVASDELEEMHKQVVSSSLLALATLLDIVVTAQSERP
VSEAESKRASKAKSIAISCAENLLTTHKLFLEFLKSQSSAIRSATYSVMRSLIKNIPHAI
KKTDIIDLADAILGAFRETDPSCHSSMWDVILLFSRKFPESWSSLKIKKSALSRFWHFLR
NGCFGSQQVSYPALVLFLDVVPAQAVEAQKFLLEVLQNLWAGRSLSYSSHLDRLALFEAM
KECFLFSLKNTDRYSDAADPYRFQQTLADQILLKLLWHEYLFSVSSNNQERVFSSMDFSS
GGIQPSHQASRQLNVKVTEGYAQDLGKCIVEILTDIFLLEPDLLLLFCSTFQETCLGVFQ
ETDSSIENGEGVTEFLSVVNQQAVRKGETWPLVYLVGPTLSKSFPLIRTLDSPNAVRFMV
AAVSIFSPRKIIQEIFCIEPEGNQFLHVFKETFIPWCLQANSPTTSVRLDLLLSLLDDEY
LAEQWASIIMHATNLEELKSVNGIVSSDCLSLLAMLIEKAITRTSNRSTVQVPYAAHWHH
HLLDSAAVFVVQAFPPFGSSNVSYMRAVLGGIAGDDETNFLSRSTLVLVFEEILKKLTVF
MMDSPFIWVKVMCSVIPVRDNNTELGFEPSMDVNEMADFALQVLDGGFSALKCLHHEVEL
LSGILAAIFVIKWECSMATVFNNKLGEESTEKIKSRFASCELVHALHRKICNQFLFSINT
DSRNILESILVQTVRSAVLKDENMDTVEVTSLCSHWVLELLECLCQDQFEVQKLLDRFLS
QDDSWPVWVAPDIKVGKGAALVKTESASIDNPKGTRFVALIDRLIPKMGFDKIIAGAVSN
TSSSLTEDHINQPTTTLQCHYSRAWLAAEILCTWKWNGGNALCSFLPYLCEYFNSECYTP
EDELLGSIVTILLDGALIHGGVAELSLSNLSPVTHVENIREPFMRAVISLVSKLFEDDVW
GKDKAVFLFNQLLNKLHIDETINRNCLRILPSVMDVIVRPLSVSFGQGAAKSQSASSDCC
EVQQAIINWLQRTQSFPPLNAWQTTEDMEDWFHLVISCYPVRQIEGAKGLRPERYVSSTE
RTLLFELYQKQRKNSALSVTNKLPVVQILLSKMILVAVAYCWEDFSEDDWEFVLYRFRWW
IEAAVVVMEEVAENVNGVITDGSSCELLQVMLKRINDTVSVDSSPILLGSNALIGFSSFC
NISGIEAKEPVDVSNPLKIDRWEMAKHRIIEAVLRLFFSTAATQALASSYCSEASFIVAS
SILDHSQFWDLVASLVVESSSTAREKAVKSVEIWGLSKGPVSSLYAMLFSAKTLPSLRCA
AYIILSTEPVSDLSLYTVEKTCSSGGDASNNQDTDGSAEESLNLREEVSSILEKLPYDAL
QMDLLAFERIKVFLAWSLLLSHVVSLPSSSPLRERMVQYIQEFATSTVLDCLFQHIRLEF
CVPSSLKKKDSELPASVSEAAKCATRAITSTSVLFCLESLWPVGPEKVASLAGAIFGLML
CVLPAYVRGWFSDIRDRSTSSAIEFFTRAYCSPPLIMNELSQIKKANFADDNFSVTVSKS
ASEVVATYTKDETGMDLVIRLPGSYPLRPVDVDCTKSLGISEVKQRKWLMSMMSFLRNQN
GALAEAICIWKRNFDKEFEGVEECPICYSVIHTSNHSLPRLACKTCKHKFHSACLYKWFS
TSHKSTCPLCQSPF
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atggggagaccgaaaggagatggagctagaagcaagtctcgtccctctagcagcagtctt
gctgcttctttgctgccccaaggttctacgcctgttggatttggaggctatatgggttgt
tcccgtgttgactcaactgaagattctccccctttcttggatattgacagtgaagtggca
caacacctcaagaggctttccagaaaggaccctactactaaactaaaagcattgacatca
ctatctcaattattccaacaaaagactgcaaaggagataataccgataacgccacaatgg
gcatttgaatataagaagctgctactggattacaacagagaggttcgacgagcaactcat
gttaccatgacaaaccttgttggtgttgttggaagagacattgctccatatttgaagtct
ttgatgggaccatggtggttttcccaatttgattctgcctatgaagtttcccaagctgca
aaaagatcatttcaggctgcttttccagcacaagataagcgactagatgtcttgatttta
tacacatcagagatattcaggtacattgaggaaaatttaaagcttactccccagagcatg
tcagacaagaatgtggcatcagatgaactggaggagatgcacaagcaggtagtttcttca
tcattactggcgttggccacccttcttgatattgtggtcaccgcacaatctgaacggcct
gtttcggaagccgagtcaaagcgtgcttctaaagccaaaagcatagctatttcatgtgct
gagaacttgttaactactcataagttatttttggaatttctgaaatctcagagctctgct
attcgctcagcaacatattcagtcatgagaagtctcataaaaaatattcctcatgctatc
aagaaaacagacattatagatcttgcggatgcaatacttggagcttttcgggaaacggat
ccctcatgccattcatcaatgtgggatgtgattttacttttttcgcgaaaatttccagag
agctggagtagcttgaagattaaaaaatctgctttaagtagattttggcattttcttcga
aacggctgttttggatcgcagcaagtatcatatcccgctctcgtgttatttttggatgtt
gtacctgcacaagcagttgaagcacagaagtttcttcttgaagttctccagaatctgtgg
gcaggaagaagcttgagttattcatcacatctagaccgtcttgcactttttgaagcaatg
aaagaatgttttctatttagcctgaaaaacactgataggtattctgatgcagcagatccc
tacagatttcagcagacacttgcagatcagattctcttaaagctgctgtggcatgaatac
ctattttctgtcagctcaaacaaccaggagagggtcttttcttctatggatttttcttct
ggtggtattcaaccttctcatcaggcatcaagacaacttaatgtcaaagttactgagggt
tatgcgcaagatcttgggaaatgtattgttgaaatccttacagatatctttcttctggaa
cctgatttgcttttgctattctgttcaacattccaagagacctgccttggtgtatttcaa
gaaacagacagttctattgagaatggtgaaggggtgactgagttcttgtcagtagtgaat
caacaagcagtaaggaaaggtgaaacttggcctctagtttatttggtgggaccaacattg
tcgaagtcattccccttgattagaacacttgattcccctaatgcagtgagatttatggtg
gctgctgtctctatatttagtccgcggaagataattcaagagatcttttgcattgaaccc
gaaggaaaccaattcttgcatgtcttcaaggaaacctttatcccatggtgcttgcaggct
aacagtcccactactagcgtgcgtctagatctcttgctttcgttacttgatgatgaatac
ttagcggaacagtgggctagcatcattatgcatgcaacaaatttggaagaactgaaatct
gtcaatggaattgtgagctctgattgcctttctctattggctatgctcattgaaaaagca
ataacaagaactagcaatagaagcactgtgcaagttccctatgcagcccattggcaccat
catctgttggattctgctgccgtttttgttgttcaagcttttccaccttttggatcttcc
aatgtttcgtatatgcgtgctgttctgggtggcatagcaggagatgatgaaacaaacttt
ctgtcccgcagtacactagtactagtatttgaggagattcttaagaagttgacagttttc
atgatggattctcccttcatatgggtcaaggtcatgtgttctgtaatacctgtcagagac
aataacacagaactgggatttgaaccttctatggatgtgaatgagatggccgattttgct
ttacaagtgcttgatggtggcttttctgcattgaaatgtttgcatcatgaagttgagctg
ctttcaggaatcttagctgcaatatttgtaattaaatgggaatgcagcatggctactgtc
ttcaacaataaacttggtgaagaatccacagaaaaaataaagtcaaggtttgcttcttgt
gagctagtgcatgctctccatcgcaaaatttgtaaccagttcctatttagtatcaacaca
gatagtcgaaatatcctggaaagcatcttggtccagactgtaaggagtgctgtgcttaag
gatgaaaatatggatactgtggaagtcacatctttatgctctcactgggtccttgaactt
cttgaatgtctctgtcaagatcagtttgaggtacaaaagctgttagacagatttctaagc
caggatgattcttggcctgtttgggttgcaccagatattaaagttgggaaaggagcagct
ttggtgaaaactgagagtgcttcaattgataacccaaaaggtaccaggtttgttgctctg
atagacaggcttataccaaagatggggtttgataaaatcatagctggtgctgtttctaat
acgtcttcatctttaactgaggatcatattaatcaacctaccacaactctgcaatgtcat
tattcccgtgcctggctggcagctgaaatcttgtgcacttggaaatggaatggcggcaat
gccttgtgctccttcttaccttatctctgtgaatattttaatagtgaatgttatacacct
gaggatgagttgttaggttctattgtcaccattttgctcgatggtgcacttattcatggg
ggagttgcagaactgagtctttcaaatttatctcctgttacacacgtggaaaatattcga
gaaccctttatgagagctgttatatcattagtgtctaaactttttgaagatgatgtatgg
ggaaaagacaaggcagtatttcttttcaatcagcttttgaataaactccatattgatgaa
acaataaatagaaattgtttgaggatacttccttcagttatggacgtaattgttagaccc
ttgagtgtttcatttggccaaggcgctgcaaaatcgcagtctgcttcttctgactgttgc
gaagtgcaacaggctatcataaactggctccagcgaacacaatcttttccacccttaaat
gcatggcaaacgacagaagatatggaagattggtttcaccttgttatatcctgctatcct
gtacgacaaattgaaggagcaaaagggctaagaccagaaagatatgtcagctctactgag
agaacgttactgtttgaattatatcagaagcagagaaagaattcagcattatctgttaca
aacaagctgccagttgtgcagattttgttatcaaaaatgattttggttgcagttgcttat
tgctgggaagactttagtgaggatgattgggagtttgttctataccgttttaggtggtgg
attgaagcagcagttgttgtgatggaggaagttgctgagaatgtgaatggtgttattacg
gatggttctagttgtgaacttttgcaagttatgctgaagaggatcaacgataccgtttca
gtggactcttctccaattttactcggaagcaatgctctaattggattttcttcattttgc
aatataagtggtattgaagcaaaagagcctgttgatgtttctaatcccttgaaaattgac
agatgggagatggccaaacaccgaattatcgaagctgttcttcggttgttcttttctact
gctgctacccaggctttggcaagttcttattgtagtgaagcttctttcattgtagcatcg
tctattcttgatcattctcagttctgggacttagtggcttcacttgtcgtcgagtcctct
tcaactgcaagagagaaggcagtaaaatcagttgaaatctggggcctaagtaaagggcca
gttagctctttgtatgcaatgctgttttctgccaagacacttccttccctaagatgtgct
gcatatattattctttcaactgaacctgtgtctgacttatctttgtacactgtcgagaag
acatgttcatctggtggagatgcctccaacaaccaagatacagacggttctgctgaagaa
agtctcaatcttagggaagaagtttcttccatactggaaaagctaccatatgatgctctg
caaatggacttgcttgcatttgaacggataaaggtctttctagcttggtctttgttactt
tcacatgtagtatcactaccatcatcatcacccctgagggagagaatggttcaatacatt
caagaatttgctacttcaacagtgttagattgccttttccagcatatccgtttggaattt
tgtgtaccatcaagcttgaaaaagaaggattcagaacttccagcttcagtgtcagaagca
gcaaaatgtgcaacccgtgccatcacttctacttctgtattattttgcttggaatcactt
tggcctgtcggaccagaaaaagttgcttcacttgctggtgcaatttttggcctcatgctt
tgtgttcttcccgcttatgttcgagggtggtttagcgatatacgtgaccgttctacttca
tctgccattgaatttttcactagagcatattgtagcccccctctgattatgaatgaactg
tctcagattaaaaaagccaattttgctgatgataatttctctgtcaccgtgagcaaatct
gcaagtgaagtggtggctacctacacaaaagacgaaacaggaatggacctagtaattcgt
cttccgggatcttaccctttgcgacctgtggatgtagattgtactaagagccttggcatt
agtgaggttaagcagagaaaatggttaatgtcaatgatgtcatttcttcgtaatcagaat
ggtgccttagctgaagccatttgcatatggaagcggaattttgacaaggaatttgaaggt
gtggaggaatgccccatatgttacagtgtcattcacacttcaaatcatagcctcccacgg
ctagcttgcaaaacctgcaaacacaagttccattcagcatgcctctacaagtggttctct
acttctcacaagtcaacttgtccattgtgtcaatctcctttttga
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integrated database retrieval system
