Solanum lycopersicum (tomato): 101248068
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Entry
101248068 CDS
T02665
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sly04121
]
101248068
Enzymes [BR:
sly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101248068
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101248068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-rbx1
zf-RING_5
zf-RING_UBOX
zf-ANAPC11
Prok-RING_4
zf-C3H2C3
SH3_CYT4
zf-RING_4
zf-RING-like
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
101248068
NCBI-ProteinID:
XP_004250405
UniProt:
A0A3Q7ITJ7
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All DBs
Position
11:complement(10611344..10625459)
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AA seq
444 aa
AA seq
DB search
MMNLWVFWYLSVVCFLGCRVLGNVVLVGKNETLSFEDIEANFAPSVRGSGKCGILYVAEP
LDACSTLTNKVEPVKNSTHDLFLLIIRGGCSFEDKVRQAQAAGFKAAIIYNDEYGDLVAM
AGNSAGVQIPAVFVSRVSGEKMTKYAGDIDVEVWIIPSFENSAWSIMAISFISLLAMSAV
LATCFFVRRHRIRRDRPRASRFREFHGMSSHLVKAMPSLIFTSVLEDNCTSVTCAICLED
YIVGDKLRILPCRHKFHAMCVDAWLTSWRTFCPVCKRDARTSNGEPPASESTPLLSSSLA
SLSSLSSLRSSLASSSAIQIGQGASRSPSVSRPQSISSTPYNHQSLQSYHQSPHLTISRS
SLDLQNASSQRSRASYLISPHSLGYPSLSPLNSRYMSPYIPSPGNASSSYIGSSSRHPNP
LRHSESTTSFSPFASAQSLPGCES
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatttgtgggtattttggtacttgagtgttgtttgttttttgggttgtagagtt
cttggtaatgtggttttggtaggaaagaatgaaactttatcgtttgaagacattgaagct
aattttgctccctcagtaagaggatcaggcaaatgcgggatattgtatgtggcggagcct
ttagatgcctgctcgactttgaccaacaaggttgaaccagttaaaaatagcacccatgat
ctgttcttgctgataataaggggtggatgtagttttgaagataaagtcagacaagcccag
gcggcaggtttcaaggcagccattatctacaacgatgaatacggtgatctagttgcaatg
gcaggaaactctgctggtgtacagatacccgcggtgtttgtttctagagtttcaggggaa
aaaatgacaaagtatgctggtgacattgatgttgaagtatggataatcccaagctttgag
aactctgcctggtccatcatggctatatcattcatttcgttactagctatgtcagcagtg
cttgctacctgtttctttgtccgtagacatcggatacgaagagaccggcctcgggcctca
cgctttcgtgaatttcatggaatgagtagtcatttggtgaaagctatgccaagcttgata
tttacatcagttttggaggataattgtacatcagtaacatgtgctatctgtcttgaagac
tatattgtgggagacaagcttagaattcttccttgcaggcacaaatttcatgctatgtgc
gttgatgcgtggcttacatcatggagaacgttttgccccgtctgtaaacgtgatgcaagg
actagcaatggtgagccaccagcatcagaatctacgccattgctttcttctagtctagct
tctttatcttcgttgtcatccctaagatcatcattagcttcatcatcagcaatacaaata
ggccaaggagcatcccgatccccttcagtttctcgtcctcaatcaatttctagtactcct
tataatcatcagtcgcttcagtcctaccatcagtcacctcatcttactataagccgcagt
tcacttgaccttcaaaatgcgtcttcccagagatctcgtgcatcttatttgatttcccct
cactcattgggctatccttctttatctcctcttaattcaagatacatgtcaccatatatt
cctagtccaggaaatgcctcgtccagttatataggctcctcaagtcggcatcccaaccca
ctgcgtcatagtgagtcaactactagcttttcgccatttgcttcagctcagtctcttccg
ggatgtgagtcatga
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