Solanum lycopersicum (tomato): 101248303
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Entry
101248303 CDS
T02665
Name
(RefSeq) BRCT domain-containing protein At4g02110 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101248303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sly03032
]
101248303
03400 DNA repair and recombination proteins [BR:
sly03400
]
101248303
DNA replication proteins [BR:
sly03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
101248303
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
101248303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
PHD
Motif
Other DBs
NCBI-GeneID:
101248303
NCBI-ProteinID:
XP_010321873
LinkDB
All DBs
Position
6:complement(3642471..3651114)
Genome browser
AA seq
1237 aa
AA seq
DB search
MLYEDSSKIFVGVRFVLIGFDPHRKEQIQSKLVEGGGVDAGKYGPDCTHLIVDSIIYDDP
ICVSARRVGKIVVTSLWVAHSFDLGMPVDHHSVMYRPPRNLNGIPGAKSLIVCLTGYQRQ
DRDDIMTMVGLMGANFSKPLVANKVTHLICYKFEGEKYELAKKMKTIKLVNHQWLEDCLK
SWEILSEAEYDKSGYELEMMEAEAKDSEDENEGIAANRSAETIAIMGPENPKSPNQFFVK
QEASTNISGLNTSRGSSGLGNRKELSLSASKQSKSDQVPAFEESPNRHDEMLNSNFYRTK
EEPPSSMQQNGSDLVSVSNSARKSPHSCLSREFPRKFSSPMTSEHMKSYSGSPAATEAGI
GFDCFNLSSQKGLEKSELGVNTPKNLSFSGKGQSSKLPEKRNMGISDSSFNSPRAGNNFE
SIPDGYLTANRSEELINSSKLHSLSHKGSHLLSRNPAPHLDKGVALETMQHYDSTISNPA
TLSTGQGHDEDAPQSSTYMIVGSKETSHAAVDVSGPLDERHDVPSPVNERRDTLKSNVLA
EFNKAGDDSVSGSKTLKKRSLSKKTLGSRQSLGKGDGRNQKGSLLINKTVLTNDSAASSS
GGREETEHQNILSSTKGEVLPADNANSSKEIERNDFLNSEKESAKTNESLNDDTEAPEDQ
EDEELNVLREKSTGTEAQHSGLQSAEKKINANKVVNKNEREDIAKSLSTVSNEFETQKTS
SGKVTKLSKSTSVGKASEEKVPEGPKCLKKKSKKTNLATKRAAVSVEGALSTESNEFETQ
KTSSGKETKLSKSTSVGKASEENVSEGPKCMKKNTKKTNLATKRAAASVEGAERKKCRTD
RNKVEVKKGKGSPSETGKASVISTENQLKSSMDVEKENMPVNGLQNAIHNDHEADRSSPY
DTKSRSLKVTEVQSEPRWFIVSGHRLQRKEFQQVIKRLKGKVCRDSHQWSYQATHFIVPA
PVRRTEKFFAAASSGRWILNTDYLTASVEAGKLLDEEPYEWHKKGFTEDLAINLEAPRKW
RLLRERTGHGALYGMKIIIYGDCIVPPLDTLKRAVKAGDGIILATSPPYSRFLESSVDFA
IVSEVMPRCDKWVQEFLRHEIPCVLPDYLVTYVCKPGYTLSNYVQYNTHSWAERSLKKHV
NRLEEIVEEMEPSDDSSNDIACQVCGSPDRGEVMLICGDESGSLGCGIGMHVDCCDPPLE
CIPEEDWFCPECSKNMSNTSTKRKSKKGTSTSKKKKK
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgttgtacgaagacagctccaagattttcgttggtgttcgttttgttctaattggattc
gacccccatagaaaggaacagattcaatccaagctggtggagggtggcggagttgatgca
ggcaaatatggacctgattgcacccatcttattgttgatagtattatctacgatgacccc
atatgtgtttctgctcgacgggttggaaaaatagttgttaccagcttgtgggttgcacac
agttttgatttgggaatgcctgtcgatcaccattctgtcatgtatagacctccaagaaat
ttgaatggaattccaggtgctaaatcactgatagtctgcttaactgggtatcaacggcaa
gatcgagatgatattatgacaatggtgggattgatgggtgcaaacttttcaaagccgttg
gtggcaaacaaagtcactcatctcatatgctacaaatttgagggggagaaatatgaactt
gccaagaaaatgaagacgattaagcttgttaatcaccagtggttggaggattgtttaaag
tcttgggaaatcctttcagaagcagagtatgataagagtgggtatgagttggagatgatg
gaagctgaagccaaagattctgaagatgaaaatgagggcattgctgcaaataggtctgca
gaaacaatagctatcatgggtcctgaaaatcccaaaagtcctaatcaattctttgtgaag
caggaagcctctacaaacatttcaggcttaaacacatctagaggctcgtcaggtcttggg
aacagaaaagagctgtcattatctgcttcaaagcagtcaaaatctgaccaggttccagct
tttgaagaatctccgaataggcatgatgaaatgcttaattccaacttctatagaacaaaa
gaagagccaccatctagcatgcaacaaaatggaagtgatttggtttctgtttcaaatagt
gccaggaagtctcctcattcttgtttgtccagagaattcccaaggaaattcagttctcca
atgacctctgaacatatgaagagttattcaggaagtcctgccgctactgaagcaggtata
gggtttgattgctttaacctttcctctcagaaaggactagaaaaaagtgagttaggtgta
aacactccaaagaatttgtcgttttctgggaagggtcaaagcagtaaactgcctgagaaa
aggaatatgggcatttcagacagtagcttcaattcaccaagggctggtaataattttgaa
agcataccagatggttatttgacggcaaatcgttctgaagagttaataaattcgtcaaag
ttacatagtctaagccataagggcagtcatctattgtctaggaaccctgcccctcacttg
gacaagggtgttgctttggaaaccatgcaacattatgattcaaccatttccaatcctgca
acactaagcactgggcaagggcatgatgaggatgccccgcaaagcagcacttatatgatc
gtggggtcgaaagagactagtcatgctgctgttgatgtcagtgggccactggatgaacgg
catgatgtcccatctccagttaatgaaagaagagataccctgaagtctaatgtgctggct
gagtttaataaagctggagatgattccgtgtcagggtctaagacattgaagaaaagatca
ctttccaagaagacactcggatctagacaaagtctcggtaaaggggatggcagaaatcag
aaaggttctttactcattaacaagactgttctgacgaatgattcagctgcttccagtagt
ggagggagagaggagacagaacaccaaaatatcttaagctctacaaagggtgaggttctg
cctgcagataatgctaattcgagcaaggagatcgagagaaatgattttttgaattctgaa
aaagaatctgccaaaacaaatgaatccctaaatgatgatactgaggctccagaggaccaa
gaagatgaagaattaaatgtcctaagagagaagtctactggtactgaagcacaacattca
gggcttcaatctgcggagaagaaaataaatgcaaacaaggtggtaaataaaaatgaaagg
gaggatattgcaaagagtcttagtactgtaagcaatgaatttgaaactcaaaagacttct
tctgggaaggtgaccaagttaagtaagtcaacttctgtggggaaagcttcagaggagaaa
gttcccgaaggtccaaaatgtctgaagaagaagagcaagaaaactaatctagctactaaa
agagctgctgtttctgtagaaggcgctcttagtactgaaagcaatgaatttgaaactcaa
aagacttcttctggcaaggagaccaaattaagtaagtcaacttctgtggggaaagcttca
gaggagaatgtttccgaaggtccaaaatgcatgaagaagaataccaagaaaactaatcta
gctactaaaagagctgctgcttctgtagaaggcgcagaaaggaagaagtgcagaactgat
agaaacaaagtagaagtaaagaaaggaaaaggatctccatctgaaactggaaaagcctca
gtaatttcgactgagaatcaattgaagagctccatggatgtggagaaggagaatatgcct
gttaatggactccagaatgcgattcataatgatcatgaagctgacagaagttctccttat
gatacaaagtctcgttccttgaaggttacagaagtacaaagtgagcctaggtggtttata
gttagtggacatcggctacaaaggaaggagtttcagcaggttatcaagcgattgaaaggg
aaagtgtgcagagattctcaccagtggtcatatcaggcaacgcatttcattgttcctgcc
ccagtacgaagaacagagaagttttttgctgctgcatcctctggaaggtggatcttgaat
acagattatttaactgcttctgttgaggctggaaaattattagatgaggagccatatgaa
tggcacaaaaagggatttactgaagacttagcaatcaacttagaggccccaagaaagtgg
cgacttctgagggagaggactggacatggcgcattatatggaatgaagataatcatttat
ggagactgcattgtaccaccattggatacattgaagcgtgcagttaaggcaggggatggc
attatattagcaacttctcctccttatagtcgattccttgagtcaagtgttgactttgcc
attgttagtgaggtcatgccacgctgtgacaagtgggttcaagaattcttaaggcatgag
ataccttgtgtgttgcctgattacttggtgacttatgtgtgcaaacctggttataccctc
agcaattatgtgcaatacaacactcattcctgggcggaaagatcactgaaaaaacatgtc
aatcgtttggaagagattgttgaggagatggagccatcagatgacagtagtaatgatatt
gcatgccaggtgtgtgggtcgcctgacaggggtgaagtaatgctgatctgtggtgacgaa
agtggctctcttggatgtggcattggcatgcatgtagattgctgtgatcctccccttgaa
tgtatacccgaggaagactggttttgcccagagtgtagcaagaacatgagtaatacaagt
accaaaaggaagtccaaaaaagggacgtctacatcaaagaagaagaagaagtga
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