Solanum lycopersicum (tomato): 101248416
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Entry
101248416 CDS
T02665
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101248416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101248416
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101248416
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101248416
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
101248416
NCBI-ProteinID:
XP_004228869
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Position
1:complement(3914737..3915561)
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AA seq
274 aa
AA seq
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MAVNGVDPNVYPILIREVWADKLKEAFQEISNSIDRFPCISMDTEYPGRIHHSPVPFLLQ
SPAQKYNVLKSNVDELKLIQVGITLSDANGNLPELVIEGERFRVVWQFNFSDFDSTRDRY
VEASIQLLVDSGIDLEENLRLGIRSIDFGELLMSSGLVCNDSVSWVTFQGEFDIAFLLKI
LRGRNLPDSLDEFFKFVKMFFGDKLYDVKRLTWHFPHVHGGLDEVAGQFDLVRVAGMQHQ
AGSDSLLTCHVFYRIRNDFFVNGVPDAGVLNGLT
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atggctgttaatggagtagatccgaatgtatacccgatcctgattcgagaagtatgggct
gataaactcaaagaagcattccaagaaatttctaattcaattgatcgattcccctgtata
tccatggatacagagtatcccggcagaatccaccattccccggtaccctttttgctgcag
tctccggcacagaagtataatgtgttgaaatcgaatgttgatgaattgaaactgattcaa
gttgggattaccctttctgatgctaatgggaacttgccggaattggtaattgaaggggaa
cggtttcgtgtcgtatggcagttcaacttctccgatttcgactcgacgcgtgatcgctat
gtagaggcctcaatccagctccttgtagacagtggaattgacttagaagagaatctacga
ttggggattagatcaattgatttcggtgaattgttgatgtcgtcggggcttgtatgcaat
gattcagtgagttgggtaacatttcaaggcgagtttgatattgcattcttgttgaagatt
ctcagggggcggaatcttccagatagtttagatgagtttttcaaattcgttaagatgttt
ttcggagataaattatatgatgtgaagcgtttgacgtggcattttcctcatgttcacggt
ggtttagacgaggtggcgggacaatttgacttggtccgggtggctgggatgcaacatcag
gccggttcagatagtttgttaacatgtcacgtcttttataggataagaaatgattttttt
gtaaatggtgtgccagatgccggcgttttaaatggattaacttga
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