Solanum lycopersicum (tomato): 101248420
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Entry
101248420 CDS
T02665
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101248420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101248420
04121 Ubiquitin system [BR:
sly04121
]
101248420
03036 Chromosome and associated proteins [BR:
sly03036
]
101248420
03400 DNA repair and recombination proteins [BR:
sly03400
]
101248420
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
101248420
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
101248420
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
101248420
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
101248420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
101248420
NCBI-ProteinID:
XP_069144798
LinkDB
All DBs
Position
9:complement(61235844..61245659)
Genome browser
AA seq
390 aa
AA seq
DB search
MLCIVHERDIKRQKKINSGLSEMSLESHGHILQRCPSSEIVADSNCNLEYKICESPNVVQ
PKAVIDQHPPKGSVCAFCHSAKTKEKTGPFLYFANGREVVGNVTSLSKVICVHSKCIEWT
PQVYYEGEIIQNLDTELARAAKLKCSSCGMKGAALGCYVTSCRRSYHVPCAFEIQDCQWD
MYMLVKFADMCGATVCKFWKPNVTHVVATTDVKGACTRTMKVLMAILSGKWILTMDWVKA
CVAANGPVNEELYEISLDNYGRSGGPKAGRLRASTNAPKLFDGFKFYLVGDFMPAYKSDL
LDLVEKAGGTIIQSEEQLVKQNHAAQGTQPSSLVVYNCDLSQGCTFEEESSILQQRLAEA
EDLAKQICFHTVQHTWILESIAACKLVPFC
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgctctgcatagttcatgaaagggatattaagcggcaaaagaaaataaattctggtttg
tcagaaatgagcttagaaagtcatggtcatattctacaaagatgtcctagttctgaaatt
gttgctgattccaactgcaatttggagtataaaatatgtgaatctcctaatgttgttcag
ccaaaagcagttatagatcaacatcctccgaaaggaagtgtttgtgcattctgtcattct
gccaagaccaaagagaaaactggaccatttctgtactttgcaaatggaagggaagttgtg
ggtaatgttacttctctttccaaagtcatatgtgtgcacagtaagtgcattgaatggaca
cctcaagtatattatgaaggagaaattatacagaatttggacactgagttggcaagagct
gcaaaactcaagtgtagtagttgtggcatgaagggtgcagcacttggctgctacgtaacg
tcttgcaggaggagttatcatgtgccctgtgcatttgaaatccaggattgccaatgggat
atgtatatgttggtgaaatttgctgatatgtgtggtgcaactgtgtgcaagttctggaaa
ccaaatgtcacacatgttgttgcaacaactgatgtaaagggtgcatgcaccagaacaatg
aaagttctcatggcgattttgagtggaaaatggatcctaactatggactgggtaaaagct
tgtgttgcagcaaatggtccagtaaatgaagaactttatgaaataagtctagacaattat
ggccgttctgggggccccaaagctggaaggttgagggcctcaactaatgcgccaaagctt
tttgatggtttcaagttttatttggttggagattttatgccagcttacaaaagtgacctg
ttagatctagtcgagaaggctggaggcactatcattcagagtgaagagcagttggtgaaa
cagaatcatgctgcacagggaactcagccatcttctctagtcgtatacaactgtgatctc
tcgcagggttgcacgtttgaagaagaaagcagtattttgcagcaaagattagctgaagct
gaggatctagccaagcaaatctgttttcataccgttcagcatacttggattcttgaatct
attgctgcatgtaaattggtacctttctgctga
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