Solanum lycopersicum (tomato): 101248675
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Entry
101248675 CDS
T02665
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03020
RNA polymerase
sly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101248675
09124 Replication and repair
03420 Nucleotide excision repair
101248675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101248675
03400 DNA repair and recombination proteins [BR:
sly03400
]
101248675
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101248675
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101248675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
101248675
NCBI-ProteinID:
XP_004238992
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All DBs
Position
5:4728705..4734312
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AA seq
319 aa
AA seq
DB search
MEGVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS
VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV
TSKDLLSSDHTVVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW
SPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY
DDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD
DTVEADDQFGELGAHMRGG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgtttcgtaccagagattcccaaagataaaagtacgtgaagttaaagacgat
ttcatgaaattcgagctccgggacaccgacgccagtatagctaacgctctccggcgtata
atgatagctgaagtacctactatagctatagacctagttgaaatcgaggtcaattcctct
gttctcaacgatgagttcatttctcatcgtttagggcttgtgccgctaacaagtgaacga
gcgatgagtatgcgtttctcacgtgactgtgatgcttgtgatggtgatggacaatgtgag
tactgttcggttgagttttatctacgggtgaaatgtcttagtgaccagacgcttgatgtt
actagcaaggatttgttgagttctgaccatacggttgttcctgttgattactccgatgct
tcctcgagttttgataatactcctaataagggaatcataattgtgaagctacgacgtgga
caggagttaaggttaagagctatagcacggaaaggaattggcaaagatcacgcgaaatgg
tcacctgcagcaactgtgactttcatgtatgaaccagagatctatatcaatgaggacatg
atggaatccttgactctcgaggagaaaacagaattagttgagagtagtcccacaaaagtc
tttggcattgaccccgagaacaaacaggttattgtcgttgatcctgaggcatatacttac
gatgatgaggtgctcaagaaggctgaagccatgggaaaacctggagttgtagagatacat
gccaaggaagatagttttattttcacagttgaaacaactggcgcagtcaaagcttcacaa
ttggtgctcaatgcaatagaagtgcttaagcagaagttggatgcagtacgcctttcagat
gacaccgttgaagcagacgatcagtttggagagctgggcgctcatatgcgtggaggttaa
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