Solanum lycopersicum (tomato): 101249122
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Entry
101249122 CDS
T02665
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101249122
09122 Translation
03013 Nucleocytoplasmic transport
101249122
03015 mRNA surveillance pathway
101249122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101249122
03041 Spliceosome [BR:
sly03041
]
101249122
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
101249122
Spliceosome [BR:
sly03041
]
Common components
Common spliceosomal components
Cap binding complex
101249122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
MscS_porin
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
101249122
NCBI-ProteinID:
XP_004248287
UniProt:
A0A3Q7J5A0
LinkDB
All DBs
Position
10:complement(707242..724439)
Genome browser
AA seq
861 aa
AA seq
DB search
MSSWRSLLLRLGEKCPEYAGNADFKDQIDACHSLVRREIEHSGDDVFPFLLQCAEQLPHK
IPLYGTLIGLLNLENEEFVRKLVESTQINLQDALETGQCNKIRILMRFLTVLMCSKVIQP
SALVVIFESLLSSAATTVDEEKGIPSWQARADFYITCILSCLPWGGAELVEQVPEEIERV
MVGVEAYLSIRRRVSDAGVSVFEDIEESNNVVNEKDFLEDLWSRVQDLSNRGWKLDSVPR
LHLSFEAQLVAGKSHDLSPVSCPEQPGPPGALSGIAFGRQKHEAELKYPQRIRRLNIFPS
NKTEDLQPIDRFVVEEYLLDVLFFLNGCRKECAAYMVGLPVPFRYEYLMAETIFSQLLLL
PQPPFRPIYYTLVIIDLCKALPGAFPAVIAGAVRALFDKITDLDMECRTRLVLWFSHHLS
NFQFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKIKQSIENAPALEELLPPR
GGPQFKYSAEDGTDPTERALSLELKDMVKGRKTAREMISWVEENVFPAHGFDITLGVVVQ
TLLDIGSKSFTHLITVLERYGQVIAKMCTDDDQQVKLITEVSSYWQNSAQMTAIAIDRMM
SYRLISNLAIVRWVFSPLNLDRFHVSDSSWEILRNAVSKTYNRISDLRKEISSLERSVVL
AEKAASRAREELESAESKLSVIDGEPVLGENPVRIKRLKSYAEKAKEEEVSVRDSLEAKE
ALLARAVDEIEALFLSLYKSFLTALAEPLHDASRDGTLRPSGHVDDMTIDLEDSSVMELD
KDDERSKKSHPNGSGERKGYNLDEKQQWCLTTLGYLKAFTRQYASEIWQHIEKLDAEVLT
EDTHPLVRKAIYCGLRRPLEE
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagtagttggaggagtttgctcttgcgactcggcgagaagtgtcctgagtacgccgga
aatgctgatttcaaagatcaaatagatgcatgccatagtttggttcgccgagaaatagag
cattctggggacgatgtttttccattccttctccagtgtgctgagcaattgcctcacaag
atacctctgtatggaacactgattggccttttgaatttggaaaatgaggaatttgtcagg
aaattagtggagagcactcaaattaatttacaggatgcgttggagactggacagtgcaac
aagatccgtatattgatgaggtttttgactgttttgatgtgcagcaaagttatccaaccg
agtgcattagtggttattttcgaaagcttattatcatcagcagcgactactgtggacgaa
gaaaaaggaattccctcttggcaagcacgtgctgacttctatattacttgtattttatcg
tgccttccttggggtggtgctgaacttgttgagcaagttcctgaggagattgaaagggtt
atggttggagtagaagcctatttaagtattcgaaggcgtgtgtctgatgctggggtttct
gtctttgaggatattgaagaatccaataatgttgtcaatgagaaggatttcttggaggac
ttgtggtctcgagttcaagatctttctaatagagggtggaaactcgatagtgttcccaga
ctgcacctatcttttgaggcacagctggttgctggtaagtctcatgatttatctccagta
agctgccctgagcaaccaggtcctcccggagcattatctggaattgccttcggtagacaa
aagcacgaagctgagttaaaatatcctcaaaggataaggaggctaaatatatttccttca
aataaaactgaggatctccaacccattgatcgctttgttgtggaagagtatttgttggat
gtgcttttcttcttgaatggatgtcgaaaggaatgtgctgcgtacatggttgggctgcct
gtacctttcagatatgaatatcttatggctgagacaatattctctcagcttctcttgttg
ccgcaaccgcccttcagaccgatatattacacattggttatcattgatttatgcaaggct
ctgccaggggcctttccggcggtaatagctggagctgttcgtgctctttttgataaaata
acagatctagacatggaatgccgtacacgtcttgtactttggttctcacatcatttgtca
aactttcaatttatctggccatgggaagaatgggcgtatgtgttggatctcccaaagtgg
gccccacaacgtgtttttgttcaagaggttttggaaagggaagtccgtctttcatattgg
gacaaaatcaagcagagcattgagaatgcccctgctttggaggagctacttccaccaaga
ggtggaccacaatttaaatatagtgcggaagatggtactgatccaactgagcgtgcactt
tctttagaactcaaggacatggtgaaaggtaggaaaactgcgcgggaaatgatctcctgg
gtagaagaaaatgtttttccagcccatgggtttgatattacccttggagttgttgttcaa
acacttctcgacatcggatcaaaaagctttactcatttgattactgtcttggagagatat
ggccaagtcattgcaaagatgtgtactgatgatgatcaacaagttaagctgattacggaa
gtaagttcttactggcaaaacagtgcgcaaatgacagctattgccatcgaccggatgatg
agttatcggcttatatctaatttggccatagtgagatgggttttctctccactgaatctt
gatcggtttcatgtttctgacagttcgtgggagatcctcaggaatgctgtcagtaagacg
tataatcggatttctgatctgagaaaagagatttcatcccttgagagaagtgttgtcttg
gctgaaaaagctgcatctagagccagagaagagttagaatctgccgagtctaagctgagt
gtcatagatggggaacctgttcttggtgaaaaccctgtaagaataaaacggctgaaatca
tatgctgaaaaagcaaaagaagaggaggtatctgttcgtgattctttagaagcaaaggaa
gctctccttgctcgagctgttgatgaaattgaggctttgtttctttcactgtataaaagc
ttcttgactgctttagcggaaccccttcatgatgcatccagagatggaaccttgcggccc
tctggtcatgtagatgatatgaccattgaccttgaagattcttcagtaatggagttagac
aaggatgacgaacgatcaaagaaaagccatccgaatgggagcggagaaagaaagggctat
aatcttgatgaaaaacagcaatggtgtttaacaactctgggttacctcaaagccttcact
aggcaatatgcttcagagatatggcagcatattgagaagctggatgctgaggtactaact
gaagatactcatcctctggttcgaaaagctatatactgtggcctgcgaagacctcttgag
gaatga
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