KEGG   Solanum lycopersicum (tomato): 101249305
Entry
101249305         CDS       T02665                                 
Name
(RefSeq) WD repeat-containing protein
  KO
K15361  WD repeat-containing protein 48
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    101249305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sly03400]
    101249305
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     101249305
SSDB
Motif
Pfam: WD40_Prp19 WD40 DUF3337 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML_2 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR75_2nd ANAPC4_WD40 Beta-prop_DCAF12 Beta-prop_IP5PC_F RAWUL WD40_RFWD3 WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 101249305
NCBI-ProteinID: NP_001316546
LinkDB
Position
1:84561019..84575851
AA seq 763 aa
MHRVASAGNTSNSVRPRKEKRLTYVLNDAGDTKHCAGVNSLAVLKSPATDGCEYLFTGSR
DGTLKRWALAEDGATCSATFESHVDWVNDAVLTGSNTLVSCSSDTTVKVWNGLSEGYCIK
TLRQHSDYVTTLASAEKNSNVIASAGLGGEVFIWDLEAALTPTSKSGDATEEDCSNGVNG
SGSSLPMTSIRPISSGNNISLQTQSQVYIPVTAKGHKESVYALAMNESGSLLVSGGTEKV
VRVWDPRTGSKTMKLKGHTDNIRALLIDSTGRFCISGSSDSMIRLWDLGQQRCVHSYAVH
TDSVWSLASTPTFSHVYSGGRDLSLYLTDLATRESVLMCTKEHPILQLALHDDGIWVATT
DSSVHRWAAEVRNPQKVFQRGGSFLAGNLSFSRARVSLEGSTPVPVYKEPSLSIPGTPGI
VQHEILNNRRHVLTKDTAGTVKLWEITRGTVIHNYGEVSFEKKKEELFEMVSIPAWFTVD
TKLGNLSVHLDTPQCFSAEMYSADLHIPGKPEDDKVNLARETLKGLLAHWLAKRKQRFGS
QALANGEAPAGKDVPTRNLTASKIEVDGSADNDAAVYPPFEFSAACPPSIITEGSQSGPW
RKKITDLDGTEDEKDMPWWVVDCVMNNRLPPRENTKCSFYLHPCEGSTVQILTQGKLSAP
RILRIHKVVNYVIEKMVLDKPLDSLNSDGAAGVSGGQVTHPANGGDGIFRTGLKPWQKLK
PSIEILCSNQVLSPDMSLATVRAYIWKKPEDLILNYRVLTSKG
NT seq 2292 nt   +upstreamnt  +downstreamnt
atgcaccgtgtagcaagtgcagggaacacgtccaattcggttcggcctaggaaggagaag
aggttgacttatgttttgaatgatgcaggtgacactaagcattgtgcaggtgtaaattct
ttggctgtattgaagtcaccagcaactgatggatgtgaatacctattcactgggagcaga
gatggcacattaaagagatgggcattggctgaagatggtgccacctgctctgccacattt
gagtcacatgtcgattgggttaatgatgcagttcttacaggtagtaacacattagtatca
tgctcctcagacaccactgtcaaggtgtggaatggcttatctgagggatattgtattaag
acactccggcagcactccgattacgtcaccacccttgcttcagcagaaaaaaatagcaat
gttattgcatctgctggtcttggtggtgaggttttcatatgggatcttgaagctgcactt
actccgacatctaagtccggtgatgccaccgaagaagactgttcaaatggtgtcaatggt
tcaggaagttcattgcccatgacaagcatccgtcctatcagttcgggcaataacatttcc
ttgcagacccagtctcaagtatatattcctgtgactgcaaaaggccataaggagtccgta
tatgcattggcaatgaatgagagtggatcccttcttgtttctggtggtactgagaaggtt
gtgcgcgtttgggacccaagaactggttccaagaccatgaagctaaaaggtcatacagat
aatattagggctcttctgatagactccactggcaggttctgcatatctggatcctctgat
tccatgattagactatgggatctaggtcagcagcgttgcgtgcattcttatgctgtgcat
acggattctgtatggtcacttgctagcactcctacgtttagtcatgtttatagtggtgga
agagacctatctttatacttgacagatttggcaacaagggagagtgtattgatgtgcaca
aaggaacaccccattttgcagttagcattgcatgatgatggcatttgggtggccacaact
gattcatctgtacataggtgggctgcagaagtgcgtaatccccagaaagttttccaaaga
gggggctcattcttggctggaaacttgtccttttcccgggcaagggtttctctagaagga
tctacacctgttcctgtttataaagaaccatctcttagcattcctggaactccaggaata
gtgcagcatgagattttgaacaacagaagacatgtcctgactaaggatactgctggaaca
gtgaagttgtgggagatcactagaggcactgtgattcacaactatggagaggtttcattt
gagaagaagaaagaagaactttttgagatggtgagcatccctgcatggttcactgtggac
actaagcttggaaacttgtctgtacatctggatacaccacaatgcttttctgctgagatg
tactctgctgatctccacattccagggaagcctgaagatgacaaggttaatttggcacga
gaaacccttaaagggctgttggctcattggttagccaaaagaaaacagagatttggatct
caagctttggccaatggggaagccccagctggaaaggatgtacctacaaggaatctgacc
gcgtcaaaaattgaagtggacggtagtgctgacaatgatgctgcagtatatcctcccttt
gaattttcagcagcatgccctccatcaattattactgagggttctcaaagtggtccatgg
aggaaaaagattaccgacttagatggaacagaagatgaaaaggacatgccatggtgggta
gtggattgtgtgatgaacaatcggttgcctcccagggaaaataccaaatgtagcttctac
ttacatccatgcgagggttctactgttcagatccttacccagggaaagctgagtgcgcct
cgcatattaagaattcacaaagtcgtcaactatgttatagaaaagatggttcttgataag
ccactggatagcctaaactcagatggagctgctggagtgtctggtggacaggtgacacac
ccagctaatggaggagatggcatatttcggactgggctgaagccttggcaaaagcttaaa
ccatccatagagatattgtgcagtaaccaggtcttatcccctgatatgagcttagcgact
gtccgtgcatatatatggaagaaacctgaagaccttatcctcaactaccgggtgttgacg
agcaagggatag

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