Solanum lycopersicum (tomato): 101249452
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Entry
101249452 CDS
T02665
Name
(RefSeq) ubiquitin receptor RAD23c
KO
K10839
UV excision repair protein RAD23
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03420
Nucleotide excision repair
sly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101249452
09124 Replication and repair
03420 Nucleotide excision repair
101249452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
sly03051
]
101249452
03400 DNA repair and recombination proteins [BR:
sly03400
]
101249452
Proteasome [BR:
sly03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
101249452
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
101249452
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
Rad60-SLD_2
UBA_RAD5A
Dsc3_N
CUE
TECR_N
UBA_3
Ubiquitin_2
Ubiquitin_4
NQRA_N
Crinkler
Motif
Other DBs
NCBI-GeneID:
101249452
NCBI-ProteinID:
XP_004236965
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Position
4:complement(1429891..1440569)
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AA seq
409 aa
AA seq
DB search
MKIFVKTLKGSHFEIEVKPEDTVADVKKNIETVQGSDVYPAAQQMLIHQGKVLKDGTTLE
ENKVAESNFIVIMLTKSKSSAGEGSATSTAATAKTPQSSTAAPSSTPASTAAQVPVASPA
AAPSPAPAPAAAPAPALAPAPASVPVPAPALAPASAVVSGSDVYGQAASSLVAGNNLDGA
IQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYSGIPEAAEVPPVGGSPPSVQAGNQ
PAQPQPAAQPAPVPAGGPNADPLNLFPQGLPSVGSNTAGANTLDFLRNSQQFQALRAMVQ
ANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNNVLGQLAAAMPQAIS
VTPEEREAIERLEQMGFDHDLVLEVFFACNKNEELAANYLLDHIHEFEE
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaagatttttgtgaaaactctcaaaggctctcactttgaaattgaagtcaaacctgaa
gatacggttgccgatgtgaagaagaacatagaaacagttcagggttcagatgtatatcct
gctgcccagcagatgcttatccaccaggggaaggtacttaaagatgggacaacactcgaa
gaaaataaagttgctgaaagcaactttatagtaatcatgctgacaaagagtaagagctca
gctggagaaggttcagctacttcaactgcagcaacagctaagacaccacagtcaagtacg
gcagcacctagttcaactcctgcatctacagctgctcaagtcccagttgcatcgcctgca
gcagctccctccccagcaccagcccctgccgctgcccctgcccctgcccttgccccagcc
ccagcctcagtcccagtcccagctcctgctcttgctcctgcatcggctgttgtgtcggga
tctgatgtctatggccaagctgcttcaagcttggttgctggtaacaaccttgatggagca
attcagcagattcttgacatgggtggtggaacgtgggatagggagacggttgttcgagcc
ctacgggcagcttttaacaatcctgagagggctgttgaatacttgtactctggtattcct
gaggcagcagaggtccctcctgttggaggaagtccacccagcgtgcaggcaggtaatcaa
ccggctcagcctcaacctgcagcacaaccagcacctgttcctgcaggcggacccaatgca
gatcccttgaatctctttcctcagggtcttcctagtgtgggatctaatactgctggtgcg
aacaccttagactttctaaggaacagtcagcagttccaagctttacgggcaatggttcag
gccaatccacaaattttgcagcccatgcttcaggagctaggcaagcagaatccccaccta
atgaggcttatacaggagcaccaggctgattttcttcgccttatcaatgagcctgttgaa
ggaggagaaggcaacaacgtactgggccagcttgcagcagcaatgccacaggctatatct
gtaacacccgaagagcgtgaagccatagaacgtcttgagcagatgggctttgatcatgac
cttgtactggaggttttctttgcctgcaacaaaaatgaggagctcgctgctaactacctc
ttagatcacattcacgagtttgaagagtga
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