Solanum lycopersicum (tomato): 101249468
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Entry
101249468 CDS
T02665
Name
(RefSeq) replication factor C subunit 1 isoform X2
KO
K10754
replication factor C subunit 1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03030
DNA replication
sly03410
Base excision repair
sly03420
Nucleotide excision repair
sly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101249468
03410 Base excision repair
101249468
03420 Nucleotide excision repair
101249468
03430 Mismatch repair
101249468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sly03032
]
101249468
03400 DNA repair and recombination proteins [BR:
sly03400
]
101249468
DNA replication proteins [BR:
sly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101249468
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101249468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
Rad17
RCF1-5-like_lid
AAA_30
AAA_22
AAA_19
AAA_5
BRCT_2
AAA_assoc_2
RuvB_N
AAA_14
AAA_16
DNAX_ATPase_lid
nSTAND3
Gp44_lid
AAA_18
NTPase_1
RsgA_GTPase
PTHB1_hp
KTI12
Sigma54_activ_2
Bro-N
SurA_N
Motif
Other DBs
NCBI-GeneID:
101249468
NCBI-ProteinID:
XP_004242616
LinkDB
All DBs
Position
7:complement(2306024..2319078)
Genome browser
AA seq
1012 aa
AA seq
DB search
MSDIRKWFMKQHDKGTGNGSMSKNSAAEKPSPTSPKPENLVQEGQETANRRKTSKYFATD
KVKAKEEKVEEVSAKRKAPNAAGISSAPAAKRIHKAEDEDDFVPVVSAMGSRDVTPSKKS
VSGSGRGSAQKNVISDDSDDDLKNKKSDLKSAGRGRGGRAAKTSGKGVPLDESEDDASAV
KDNKSGGRGRGGKGPSAAPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLTG
LTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTTYLLCDEDVEGRKSSKAKELGTAF
LTEDGLFELIRSSKKSKSATQPESKKSVDTIVSSGKRNSQNTSDGTGSTATKILAAKQLA
PSASPAKISGSPAKSSASPAKKKTQAKESLLPWTEKYRPKAIVDIIGNKSLVEQIQRWLE
SWDEHFLKASSKGKGKKQADSGAKKAVLLSGMPGIGKTTSAKVVSQLLGFQTIEVNASDS
RGKADSKIEKGIGGSTANSIKELVSNESLSANVGRSHHQKTVLIMDEVDGMSAGDRGGVA
DLIASIKISKIPIICICNDRYSQKLKSLVNYCLPIVFRKPTKQQMAKRLNQVANAEGIQV
NEIALEELAERVGGDMRMALNQLQYMSLSKSVIQYDDIRRRLLSSSKDEDISPFKAVEKL
FDFNAKNLKIDQRIDLSMSDPDLVPLLVQENYLNYKPSSAGKDDNDLKRMSLIAHAADSI
ANSDLINVQIRRYQQWQLSPAGCLSSCIIPASLLHGQRQTLEQGERNFNRFGGWLGKNST
MGKNYRILEELHVHLLASRESYLGRANLRLDYFSLLGKKLTDPLKVLPKDEAVENVVAFM
DSYSISQEDFDNIVEISKFKGQPNLLDGVQPAVKAALTKAYNKGSKSRVIRTADLITLPG
IKKAPKKRVAAMLEPLDEGVAEENDETLAEDEENSSDTEDIDVGKKLQSDLQSLSSRGIE
VNMDLKGTGSSGSKKASAGRGRGRGSSNSSATAESSGKRGGRGSGAAAKRKR
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatatcaggaaatggttcatgaagcagcatgacaaaggcacgggtaatgggagc
atgtccaagaatagtgcagcagaaaagccttctcccactagtccaaagccagaaaacctg
gtacaagaaggacaagagactgccaacagaaggaaaactagtaaatattttgctacagac
aaggttaaggcaaaggaagaaaaagttgaggaagtgtcagcaaaaagaaaagctccaaat
gctgctggaatttcatcagcaccagctgcaaaaagaattcataaagctgaggatgaagat
gactttgtaccagtggtatcggcaatgggatccagagatgtcactcccagcaaaaagtcg
gtaagtggctctggaaggggatctgcgcagaaaaatgtgatcagtgatgatagtgatgat
gatcttaagaacaaaaaatctgatctcaaatctgctggaagagggcggggtggacgggca
gctaagaccagcggaaagggtgttcctcttgatgaaagtgaagatgatgcttcagctgtc
aaggacaacaaatctggtggacgagggcgtggtggtaaaggaccatctgcagcaccaagc
ggtggacgaggtagaggtggtggaggacggggaggtttcatgaactttggtgaaagaaaa
gatcctcctcacaagggggaaaaggaagttcctgaaggtgccccagactgtttaactggt
ttgacttttgtaattagtggaactctcgacagtttagaaagagaagaagctgaggatttg
attaaacgccatggtggtcgtgtcacaggatctgttagcaagaaaacaacttatctttta
tgtgatgaagacgtcgagggacggaaatcctctaaagccaaggagctcggaactgcattt
ctcactgaggatggtttgtttgaattgatccggtcatcaaaaaaatcaaaatcagctaca
caacccgagtcaaagaaatctgtggacaccattgtttcttctggaaagagaaattcacaa
aatacaagtgatggaacaggaagcactgccacaaagattctagctgccaaacaattggca
cctagtgcatctcctgccaaaattagtggatctcctgctaaaagtagtgcatctcctgcc
aagaagaaaacccaagctaaagagtctttactaccatggacagaaaaatacagacccaaa
gctattgtagacataatagggaacaagtcactggtggagcagattcagcgttggctagag
agctgggatgagcattttctaaaggcatctagtaagggtaaggggaaaaaacaggctgac
tctggtgctaaaaaagcagttctgttgagtggtatgccgggtatagggaagactacatca
gcaaaagtggttagtcagttgctgggatttcaaaccatcgaggtaaatgctagtgatagt
cgtggaaaggctgactcaaaaattgagaaaggaataggcggaagtactgctaattccata
aaagaacttgttagcaatgaatctctaagcgccaatgttggcagatcacaccatcagaag
actgttctgattatggacgaggttgatggcatgtctgctggagatagaggtggtgttgcc
gatcttattgctagcatcaagatctcgaaaattcctattatctgcatttgcaatgatcgc
tacagtcagaagttgaagagccttgtcaattattgcctaccaattgtcttccgtaaacca
actaagcagcagatggcaaagaggttaaatcaagtagcaaatgctgaaggcattcaagtc
aatgagattgctcttgaggaattggcagaacgtgttggaggagatatgcgtatggctcta
aatcaattgcaatacatgagtctctctaagtctgtcatccaatacgatgacataagacgc
cgccttctaagcagttcaaaggatgaagatatctcaccgttcaaagctgtagaaaagctg
tttgattttaatgccaagaacttgaaaatagatcaaagaattgacctaagtatgagcgac
ccagatcttgtcccacttcttgtccaggagaactatctcaactacaaaccaagttctgct
ggcaaagatgataatgatttaaagcggatgagcctaattgcgcatgctgctgactctatt
gcaaacagtgacttaataaatgtacagattcgaagataccagcagtggcaactttctcca
gctggttgcctttcgtcttgcataattcctgcttctttgttgcacggacagaggcagact
cttgagcagggagagcgcaactttaacaggtttggcggttggctaggaaagaattctaca
atgggaaagaattaccggattctggaggaattgcatgttcacctactcgcatctcgtgaa
tcatatctgggaagggcaaacctgagacttgactacttttctcttcttggaaagaagttg
acagatccattaaaagtgctgcctaaggatgaagctgtagagaatgttgtggctttcatg
gattcttactctataagccaggaggacttcgataatattgtggagatatcaaaattcaag
ggacaaccgaatcttctggatggtgtacagcctgctgtgaaagcggcactgacaaaggca
tacaacaaaggaagcaaatcgcgtgttattcgcacagcagatttaattacccttcccgga
attaaaaaagctcctaagaagcgcgttgcagcaatgctggagccactagatgaaggtgta
gctgaagaaaatgatgaaacacttgctgaagatgaagagaattcatcagatacagaagac
atagatgttgggaaaaaattgcagtcggatcttcagagtctcagttcgagagggatcgaa
gtaaacatggacttgaagggtaccgggagttcaggtagcaagaaagcgtctgcagggaga
ggacgaggaagaggaagttctaatagcagtgcaaccgctgaatcctcaggtaagagaggt
ggtcggggttctggagctgctgccaagagaaagaggtga
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