Solanum lycopersicum (tomato): 101249539
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Entry
101249539 CDS
T02665
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly00040
Pentose and glucuronate interconversions
sly01100
Metabolic pathways
Module
sly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101249539
Enzymes [BR:
sly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
101249539
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
101249539
NCBI-ProteinID:
XP_004253347
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Position
12:1196240..1198665
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AA seq
403 aa
AA seq
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MDMKIKFVYFGLGVLFLAHFGESQNATFDITKYGATANADISEAVGKAFKEACASTSPST
IVIPKGTFQMNQVLLEGPCKGPIELQIQAILKAPTDPNAIKTGEWLTVNKLDFFTMSGGG
TLDGQGKEAWECKKSKKCTKLPNNLSFNSLTNSIIKDITTLDSKAFHVNVNQCKNLTFTK
FNVSAPADSPNTDGIHVARASSVNITESSFSTGDDCISIGDETEQLYITKVTCGPGHGIS
VGSLGGNPGEKPVVGVFVKNCTLVSTDNGVRIKTWPASHPGVVSDIHFEDIIVQNVSNPI
VIDQVYCPSGKCNKDLPSQVKISKVSIQNIKGTSRTQNAISLTCSKGSPCEGVEVGDVDI
SYSGKEGPAKSSCENIKPTFKGKQTPAVCSAGADAPAPAAAAS
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaaaatcaagtttgtttattttggattgggtgtgttatttctagcacatttt
ggagaatctcaaaatgcaacttttgatataaccaaatatggtgccacagccaatgctgat
attagtgaggctgttggaaaagcttttaaagaggcatgtgcatcaacaagtccaagtaca
attgtgatcccaaaaggaacattccaaatgaaccaagtgctattagaaggaccatgcaaa
ggccctattgaacttcaaattcaagccattttgaaagcaccaacagatcctaatgcaatt
aaaactggtgaatggttaacagtaaacaaacttgatttcttcacaatgtctggtggtgga
acacttgatggtcaaggtaaagaagcatgggaatgcaaaaagtcaaaaaagtgcaccaag
cttcccaataatttgagcttcaactccctcacaaattccataatcaaggacataacaaca
ttggatagcaaagcattccatgtgaatgttaaccaatgcaagaacttaacattcaccaaa
ttcaacgtcagtgctccggctgatagcccgaacactgatggaatccacgtggcgagagca
agctctgtgaatatcacagagtcttctttctccacgggagatgattgtatctccattggc
gatgaaacggaacaactttacatcactaaagtcacttgtggacctggtcatggtattagt
gttggttcccttggtggaaatcctggtgaaaagccagtggttggtgtttttgttaaaaat
tgcactttagttagcactgataatggtgttaggatcaagacatggcctgcttcacatcct
ggtgttgtatctgatatacattttgaagatatcattgtgcaaaatgttagcaaccctatt
gtcattgatcaagtttattgcccaagtggaaaatgcaacaaagacttgccttcacaagtg
aagattagcaaggtgtctatccaaaacataaaaggtacatcaagaactcaaaatgcaatc
tcactaacttgtagcaaaggctcaccatgtgaaggtgttgaagttggagatgttgacatt
tcatatagtggtaaagaagggccagcaaaatcaagttgtgaaaatattaagccaactttt
aagggaaaacaaactccagctgtttgttcagctggtgctgatgctcctgctcccgccgcc
gccgcttcttaa
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