Solanum lycopersicum (tomato): 101249682
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Entry
101249682 CDS
T02665
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101249682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101249682
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101249682
mRNA degradation factors
5'-3' decay
Decapping complex
101249682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
101249682
NCBI-ProteinID:
XP_004248289
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All DBs
Position
10:982288..994340
Genome browser
AA seq
1418 aa
AA seq
DB search
MASAGNPNQSGGTPSDMHTFFKPSTLVSTNPNTQNPINPNLIPSPFPLASASYPPASAGG
AGGGTGGSAGGLYYPTQTTPFHLIPQFNHNIPLQYNNHQPQHDGHMHPQRSMSFPAPPLQ
PPPTPTSPHQFLNPGNNPNPNPGARLMALLSPPSSTHEVLQQPTVQLPPLQPTTSGSELS
DFSASPNVGIAHSGSSPLRMPSRKLPKGRHLNGDHVVYDIDDRLPGEVQPQLEVTPITKY
GSDPGLVLGRQIAVNKSYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHL
LASASVDGRVYIWKITEGPDEEDKPQITGRIVTAIQIVGEGESLHPRVCWHCHKQEILVV
GIGRHVLKIDTTKFGKAEVFSADEPLKCPVDRLVDGVQLVGAHDGEVTDLSMCQWMTTRL
VSASVDGTIKIWEDWKPQPIAILRPHDGNPIHSATFLSAPDCPHHIILITGGLLNREMKI
WVSASESWHCIQTLELKSSAEARAEETFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGL
NPMATHMDYIAEFTVTMPILSFTGTSDLQPHGEQIVQVYCVQTQAIQQYALDLSQCLPPP
MENGVGFERTESNVSRDAANIEGYVPVDPPGSKQMDFPLTSSAPKTLVNESATEIEATAR
PLMTDARTALATSAEFASSIAESKSSSLPSITTDTDIAPFTSPPPLSPELARKLSGFRSI
SNSSKHGPSVNDHFGDPKAVEYSVDRQMDAIHPNLTGLTLSDGDPMKNEDEVSGDDGSSG
ISSTIKFKHPTHLVTPSEILMANSSSEVNHVNEHKSEGQSSIQDVVINKEARNVEAEVKN
VGETRFNQKTDVGSQQELHTFVSDNKEKPFCSQASDLGIEMARECRDLSPETYIVEESRQ
FDGVSGTEQLIQASTAPKEDRDSAKETSGNNLDSNVQVSAHQPPASSAKGKKQKAKNTQG
FEPASPSPGSFKSSDSNEGGISSSNTSMEAAVSQILSMREKLNQVLNMQKETQKQMSVMV
AAPVTKEGRRLEAALGQSMEKAVKANYDALWARYHEDSAKQEKLLRDRTQQITNLISNCF
NKDMPGLIEKIMKKELAAVGQAVTRSIVPIIEKTVSTAISESFQKGVSDKAVNQLEKTVS
SKLEASVARQIQAQFQTSGKQALQETLKSIMEGSVIPGFEMSCKAMFEQVDLTFQKGFAE
HTGSALQQFESMHSPLVHALRDAINSASSMTQTLSGELADGQKKLLTLAVSGANSKLSNP
LVSHMSNGPLLHEKLEAPVDPIKELSRLLAERKYEEAFTTALHRTDVSIVSWLCLQVDLS
GILSMNPLPLSQGVLLSLLQQVACDITNETSRKLSWMRDVVSAINPTDPVIVLHVRPIFE
QVYQILNHHRTLPTTTPAELSSIRLIMHVINSMLHVPC
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgccggaaatccaaaccagtccggtggaacaccgtctgatatgcatactttc
ttcaagccttcaactctggtttcaacaaacccgaatacccagaaccccattaacccgaat
ttgataccttcaccatttccgcttgcttcagcttcttatcctccggctagtgccggcggc
gccggtggtggtacaggaggaagtgccggaggactttactacccaacccagacaacccct
tttcaccttattcctcaattcaatcacaatattcctctacagtataacaaccatcaacct
caacatgatggacatatgcatccgcaaagatctatgtctttccctgctccaccacttcaa
ccaccaccaacccctactagtcctcaccagttcttgaatcctggaaataacccgaatcct
aaccctggggctcgacttatggctttgttaagtccgccatcttcaactcatgaagttctt
cagcaacccactgtgcaacttcctcctttacagcctacaacttctgggtctgagctttct
gatttttctgcttcaccaaatgttggtattgcacattcagggagtagcccgttgcgaatg
ccgagtaggaagttacctaaagggagacatttgaatggggatcatgttgtttatgatata
gatgataggttgcctggtgaagtgcagcctcagctggaggttactcccattaccaagtat
ggttcggatccgggacttgttttaggcaggcaaattgcagttaacaaaagctatatatgt
tatgggctcaaattgggagctattcgtgtgcttaacattaacaccgcgttgaggtcattg
cttaaaggtcttgcacagagggtcacagacatggctttctttgctgaggatgttcacctt
ttggctagtgcaagtgtcgatgggcgtgtttatatatggaaaattactgaagggccagat
gaggaagataagccccaaattacagggaggattgtcactgctattcaaatagttggtgag
ggggaatctcttcatccccgagtttgttggcattgtcacaaacaagaaattcttgtggtc
gggatcggaagacatgttttaaaaattgataccacaaaatttggaaaagctgaagttttt
tcagcagatgaacctctcaagtgtcctgttgacaggttggttgatggggtacaacttgtt
ggtgctcatgatggagaagtgactgatttgtcaatgtgccagtggatgaccactcgattg
gtatctgcatcggtggatggcacgataaagatttgggaagactggaagcctcagccaatt
gcaattctcaggcctcatgatggtaatcctattcattcagccaccttcctttctgctcca
gactgcccacatcacatcatactcatcactgggggtttacttaatcgggaaatgaagata
tgggtatcagcaagtgagtcatggcactgtatacaaactttggaattgaagagttctgct
gaagctcgtgctgaagagacattttttaaccaagttgtagcgttgtctcaagcaggtctg
ctcttattagcgaatgcgaaaaagaatgccatatatgctgttcatctagagtatggcctg
aacccaatggcaacccatatggattacatagctgaatttacagttacaatgccaattttg
agtttcactggaacaagtgatttacagcctcatggtgaacagattgttcaggtgtactgt
gtacagacgcaggctattcagcagtacgctttggacctatcccaatgcttgcctcctccc
atggagaatggtgtgggcttcgaaaggacagaatctaatgtatcacgtgatgctgctaat
attgaaggatatgttcctgttgatcctcctggtagtaaacaaatggatttccctttaact
agttctgcacccaaaactttagtgaatgagagtgccacagagattgaagctacagctaga
cctcttatgactgatgcacgcactgcattggccacctctgcggaatttgcttcttctatt
gcggaatctaaatcatctagtttacccagtataactactgatactgatattgctcccttt
acatcaccaccacctttgagtcctgagttggctagaaaactttctggtttcagaagcata
tcaaacagctctaagcatggtccctctgtcaatgaccattttggggatcctaaagctgtt
gaatattcagttgacaggcaaatggatgccattcatccaaacttgactggccttactctg
tcagatggtgacccaatgaaaaatgaagatgaagtgtccggtgatgatggttcttcgggt
attagtagtacaattaaattcaagcaccctactcatttggtgactccttcagagatactg
atggctaactcatcttctgaggtaaaccatgttaatgaacataagagcgagggacaatca
agtatccaggatgttgtaatcaacaaggaagcccgcaatgtggaagcggaggttaagaat
gttggtgaaacaagattcaatcaaaaaactgatgttggctctcaacaagaacttcatact
tttgtgtctgataacaaggagaaacccttctgctctcaggcatctgaccttggaatagaa
atggctcgagaatgtcgtgacttatcgcctgaaacttatattgtcgaggaatctaggcag
tttgatggggtttctggaactgagcagctgatccaagcatcaactgcccctaaagaagac
cgtgactctgcaaaggagacctctggaaataatttagactcaaatgtgcaagtttctgct
catcaacctccagcttctagtgccaaagggaaaaagcaaaaggcaaagaacactcaagga
tttgaaccagcttcaccctcacctggttctttcaagtcatctgattccaatgagggtggt
attagctcaagtaacacctctatggaagctgcagtctcacaaattttgtctatgcgtgag
aagctaaatcaggttcttaatatgcaaaaagaaacgcaaaagcagatgagtgtgatggtt
gctgccccagttaccaaagaaggaagaagacttgaggctgccttgggacagagcatggag
aaggctgtcaaggccaattatgatgctttatgggcccgttaccacgaagatagtgctaaa
caagagaaattacttcgtgatcgtactcaacaaataaccaatttgatatctaactgcttt
aacaaggacatgcctgggctaattgagaaaataatgaagaaagaactggcagctgttgga
caagccgtcacacgcagtattgtccctatcattgagaaaactgtatcaactgctatttca
gaatccttccagaaaggagttagtgacaaggcagtaaaccaactggagaaaacagttagc
tctaaacttgaagcttctgttgctaggcaaattcaagcacaattccagacctctggcaag
caagctcttcaggaaactttgaaatctataatggaaggttcggtgattcccggctttgag
atgtcatgcaaggcaatgtttgagcaagtagatttgacgtttcaaaaaggatttgctgaa
cacactggttccgctctacagcaatttgagtccatgcattcaccgttagtacatgcttta
agggatgccattaattctgcatcatcgatgactcaaacattgagtggagagctagctgat
ggtcaaaagaagttgcttacacttgcagtttcaggagcaaattccaagttatcgaatcca
ctggttagccacatgagtaatggaccattactgcatgagaagcttgaagctcctgttgat
ccaatcaaagagttatcaagattgttggcggagcgcaagtacgaggaggcattcactaca
gccttgcacagaactgatgtgtctattgtatcatggttatgtttgcaggttgatctgtcg
ggtatcttgtcaatgaatcctctcccgttgagtcaaggtgtacttctttcacttcttcag
caggtggcgtgtgatattaccaatgagacatctcgaaaattatcctggatgagggatgtg
gtatcagccataaatccaactgacccggtgattgtactgcacgtacggcctattttcgag
caagtatatcaaatactaaaccatcatcggactctacctaccacaacccccgcggaactt
tcaagcattcgccttataatgcatgttatcaactctatgctccatgttccatgctaa
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