Solanum lycopersicum (tomato): 101250035
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Entry
101250035 CDS
T02665
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101250035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101250035
Enzymes [BR:
sly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101250035
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101250035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
101250035
NCBI-ProteinID:
XP_004244040
UniProt:
A0A3Q7HG19
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All DBs
Position
7:complement(69775088..69779885)
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AA seq
711 aa
AA seq
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MKKLCMWKSLSTTRHLSHAPTTIFTTRRRTLSSSSSFDIKNVTKSNFESALKDLRGLLRD
ADFVAVDLEMTGVTSAPWRESFDYDRYDISYLKVKDSAEKFAVVQFGVCPFRWDPHKQSF
IAHPHNFYIFPRQEIPGSNQSREFLCQTTSLDFLAKYQFDFNLCIREGISYLSRSQEKEA
LERISSIYMDESSDSVFGLSEDADFPLVRMADVLFAERMKNTIREWRDSLLSKGSSSSEI
KQISTDPSQRFQMVFFKTRPGIALSDFTSRQLRVIKAVTKKHFKDLAYIRVAGESTSPQQ
LIVYTDSNDDRDLLMKEVKDGLRKEAEMKVESAVGFRHVIDLLSSEQKLIIGHNCFLDVA
HMYSKFIGPLPSTAEDYVSSLQKLFPTIVDTKILLNANGVFRQTLNKSNTSLSRAFVSIC
PHIALGIKTSSLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGI
DFTLHVLGGDLAKDTKLQNYINRLYLSWVSGNVIDLSSGKCTPDSSASSNLKSRYQDISF
PSIILLWGFPSKLKAREIKACITQAFGPNPVSSVYHLDESAVFIQFSKPELVSKFLEMKE
TLSRNSDPISVLHPLSNILNGEHTHAATYDVYKQICSSSISKKLFADQAEAIGIKHKTVS
SRGDRGKKGNQETEVRMFNEKADDLISSPYGCSGTDRSMESFYLDEVLASK
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagctgtgtatgtggaaatctttatcaactacgcgccatttatcccacgctccg
accaccattttcactacgcgccgccgcacactctcatcatcttcttccttcgatattaag
aatgttaccaaatcaaacttcgaatcagctctcaaggaccttcgaggtcttctacgggac
gccgatttcgtagctgtagacttggaaatgaccggagtcaccagtgctccttggagagaa
tcattcgattacgaccggtatgatattagctacctgaaagttaaggactccgccgagaag
ttcgccgtcgttcagttcggcgtttgtcccttccggtgggatcctcacaagcaatccttc
atcgctcatccacacaacttctacatattcccacggcaagaaattcctggtagcaaccaa
tcccgtgagttcctttgccagacaacatcacttgatttcttggcaaaataccagtttgat
ttcaatctgtgcatacgtgaaggaatctcttatttatccagaagccaagaaaaggaggca
ctggaacgtataagttcaatatacatggatgaatcatcagattccgtgtttggcttgagt
gaagatgcagacttcccactggttaggatggcagatgttctatttgctgagagaatgaag
aacacaataagggaatggcgtgatagtttgttaagcaagggaagcagtagctctgaaatt
aaacaaatatcaactgatccaagtcagagatttcaaatggttttcttcaagacccgtcca
ggcattgcccttagtgattttacttctcgccaactaagggtgattaaagcggtcactaaa
aagcatttcaaagatctcgcctatatccgagtagcaggtgaatcaacatctccacagcaa
ttgattgtctatacagattccaatgatgacagagatctactgatgaaagaggtgaaggat
ggccttcgtaaagaagcggaaatgaaggtcgaatctgctgttggatttcgacatgttatt
gatcttctttcatcagagcaaaagttgattatcggtcacaattgctttcttgatgtggca
catatgtacagtaaattcattggtccactaccttcaaccgctgaggattatgtatcttcc
cttcagaagctctttcctaccatagtggacaccaagatactcttgaatgcaaacggtgtt
tttcgacagactttaaataaaagcaacacctcactatccagagcatttgtctctatctgt
cctcatattgctttaggtatcaaaacatctagtttggctgatagaccgtgtgtagaagtg
gaggttcaagtagatgaaaaaagatcctcgaactggaactcaggagccaagcatgaagct
ggctatgatgcattcatgactggatgcatttttgcacaggcgtgcaatcatctaggcatt
gatttcaccctccatgtgcttggtggagatttagcgaaggatacaaagcttcagaattat
atcaatcgcctttaccttagctgggttagtggtaacgtcattgatctaagtagtgggaaa
tgtacaccagactcctcagcttctagcaacctcaaaagtcggtaccaggatatctcattt
cctagcatcattctgttgtggggatttccatctaaactaaaagcaagggagataaaagct
tgtataacacaagcctttggcccaaatcctgtttcttctgtctaccacttggatgaaagt
gctgtgtttattcagtttagcaagccagaactggtttctaagtttctagaaatgaaggaa
actctaagtaggaacagtgatccaatttctgtgttgcatcctctttcaaacattctgaac
ggggaacacactcatgcagctacctacgatgtgtataaacaaatttgcagttcatccatc
tcaaagaaattatttgcagatcaggctgaagctattggtatcaaacacaaaacagtgtct
tctaggggagatcgaggtaaaaagggaaaccaagaaacagaagttaggatgttcaatgag
aaagcagatgatctgataagttcaccatatggctgctctggaacagatcgatcaatggag
tctttttatctagatgaagttctggcaagcaaatag
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