Solanum lycopersicum (tomato): 101250405
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Entry
101250405 CDS
T02665
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101250405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101250405
03110 Chaperones and folding catalysts [BR:
sly03110
]
101250405
03029 Mitochondrial biogenesis [BR:
sly03029
]
101250405
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sly04147
]
101250405
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
101250405
Messenger RNA biogenesis [BR:
sly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
101250405
Chaperones and folding catalysts [BR:
sly03110
]
Heat shock proteins
HSP60 / Chaperonin
101250405
Mitochondrial biogenesis [BR:
sly03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
101250405
Exosome [BR:
sly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
101250405
Exosomal proteins of other body fluids (saliva and urine)
101250405
Exosomal proteins of breast cancer cells
101250405
Exosomal proteins of colorectal cancer cells
101250405
Exosomal proteins of bladder cancer cells
101250405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
101250405
NCBI-ProteinID:
XP_010320798
LinkDB
All DBs
Position
5:4690852..4695005
Genome browser
AA seq
608 aa
AA seq
DB search
MSCSLNHLPAITLKNGSVNRISKRVSCSMLNTRAMAKELYFNHDGSTTKKLLVIMGVDLV
AELVGVTLGPKGRNVVLGNKYGPPKIVNDGETVLKEIQLDDPLEYVGVKLVREAGAKTNN
LAGDGCTTSIVLARGLIAEGVKVTAMGANVVQVSRGIEKTAKALISELKLMSREVEDHEL
EDVAAVSAGNDYAIGNMISEALRQVGREGVVTIEKGNSTKTNLEVVEGMQFDRGYLSPYF
VTDRRKRIAELHDCKLLLVDKKISNPKELVKILDNAVKEKYPVLIIAEGIEQDALAPVIR
NKLRGVLKVAAIKAPSFGERKSHYLDDIAILTGGTVIRDDIGLTLENAHKDLLGSASKVV
ITKDSTLIVTDGNTQTAVSKRVSQIQNLVENTEEKFQKKILNERIARLSGGIAVIQVGAQ
TQVELKDKQLRIEDALNAARAASEEGVVVGGGCCLLRLSSKVDAIKETLDNEDQKIGADI
FKRALSYPAKQIAKNAGVNGSIVVEKILSVDDMKYGYNAARDRYEDLMAAKILDPTKVVR
CCVEHAAAVAKTFLISDAVVIDIPGPVSRQIRPPTPPPPPMPTLGTPRPTNNYSSRLSGL
SGLKATGL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgagttgttctttgaatcatttacctgcaattactttgaaaaatggttcagtaaataga
atttctaaaagggtttcttgttctatgttgaacacaagagctatggctaaagaactgtac
tttaatcatgatggttctacaacaaagaagcttttggtcattatgggtgtcgatttggtg
gcagagctggttggtgtaactttgggtccaaaaggaagaaatgtagttcttggaaataag
tatggtcctccaaagattgttaatgatggtgaaactgttctaaaagagattcagctggac
gatcctctggaatatgtgggagtaaagttggttagagaagctggtgccaagactaataat
cttgctggtgatggttgcacaacatctatagtgcttgctcgaggtctgattgctgaaggt
gtcaaggttactgcaatgggcgcaaatgttgtccaagtgtctcgtggaattgagaaaact
gctaaagccctcatttctgagctcaagttgatgtccagagaggttgaggatcacgagctg
gaagatgttgcggctgttagtgctggcaatgactatgccatcgggaacatgatctcggaa
gctcttagacaggtcggaagagaaggagttgtcacaattgagaaaggcaactctactaaa
accaatctagaagttgtcgaaggaatgcagtttgatcgtggctatttgtcaccttatttt
gtaactgatcgacgaaagaggattgccgagcttcacgattgtaagttgcttttggtcgat
aaaaaaatttcaaacccgaaggagttggttaaaattttggacaatgcagtaaaggagaaa
tacccggttttgataatcgcagagggcattgaacaagacgctctggctccagtgattagg
aacaagctcaggggtgtcctaaaggtagctgcaataaaagctccatctttcggggagcgc
aagagtcattacttagatgacatcgctatcttgactggaggaactgtgatcagagatgac
atagggttgactctcgaaaatgcccacaaggacttgttgggcagtgcttcaaaggtggtg
attacgaaagactctacactgatagttactgatggaaatactcaaacagctgtttcaaag
agagtttcacagatacaaaatcttgttgagaacacagaagaaaaattccaaaagaaaatc
ttgaacgaaagaattgcaagattatccggtggtattgccgtcattcaggtgggagcacaa
acacaggttgagttgaaagataaacaactacggattgaggatgcgctcaatgcagcacgg
gctgctagtgaggaaggagtcgtagtgggcggtggctgttgtctgctgagactatcatca
aaggtggatgctatcaaagaaacgctagacaatgaggatcagaagataggagctgatatt
ttcaaaagagcactatcctatccggcaaaacagatagcaaagaatgctggtgtaaatggg
agcattgttgtagagaagatattgtcagttgatgacatgaaatatggatataatgctgca
agagacagatatgaagatttgatggctgccaaaattttagatcctacaaaggttgttaga
tgttgcgtggagcatgcagcagcagttgccaagacgttcctgatatcagatgctgttgtc
attgacatccccggaccagtatctagacaaataagaccaccaacaccaccaccgccgcca
atgccaactttagggactcctcgtcctaccaacaactatagttcaaggctgtctggtcta
tcaggtctaaaggcaactggtctttaa
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