Solanum lycopersicum (tomato): 101250941
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Entry
101250941 CDS
T02665
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101250941
03036 Chromosome and associated proteins [BR:
sly03036
]
101250941
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
101250941
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
101250941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
HHH_3
SH2
Tex_N
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
101250941
NCBI-ProteinID:
XP_004249330
UniProt:
A0A3Q7IL31
LinkDB
All DBs
Position
10:complement(61350313..61360564)
Genome browser
AA seq
1642 aa
AA seq
DB search
MAGKNVISDDEDEVGMEEEERDDEPVDGDGVDEREDEDEDEEEEEGQDEYEKDGFIVDDV
EEEEDEDEDDRADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRPKLESKKF
KRLKKAQRDMEDEGSVFYEEEEFGETGRRGRTAEQKLERSLFGDDEGQPLEDIAEEEERL
EEEEDADIGEEDEMADFIVDEEEVDEHGAPIRRKKVNKKKSRQAAGVSSSALQEAHDIFG
DVDELLMRRKQDRAKSSMHVESGEWSERRLEDEFDPTILAEKYMTEKDEHIRKIDVPERM
QISEESTGPVTPETISMEESIWIYNQLVAGVVPLFKKKDGGTSDEEKELPIDKDDIMRFL
DLMHAQKFDVPFIAMYRKEECMSLFKDPEEDGTSDDGPKNSDKKPSVRWHKVLWAIQDLD
RKWRLLQKRKSALELYYKKRFQEESRRVYDETRLKLNQQLFESITNSLQASESEREVDDV
DSKFNLHFPPGEVGVDEGQYKRPKRKSQYSICSKSGLWEVASKLGYSAEQFGRHMSLEKM
GDELEDAREPPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVRKHVRTTYMNHAV
VSTSPTPEGNTVIDSFHQFAGVKWLRDKPLSEFVDAQWLLIQKAEEEKLLQVTIKLPEVH
LNQLTTDSKDHYLSDGVSKSAQLWNEQRKLILEDAIFNFLLPSMEKEARSLLTSKAKSCL
LMEYGNVLWNKVSVGPYQRRENDISSDEEPAPRVMACCWGHGKPATTFVMLDSSGEVLDI
LYAGSLSLRGQNVNDEQRKKNDQQRLLKFMMDHQPHVVVLGAVNLSCTRLKEDIYEIIFK
MVEDNPRDVGHEMDNLNIIYGDESLPHLYENSRISADQLPTQSGIVRRAVALGRYLQNPL
AMVATLCGPGREILSWKLNTLESFLTPDEKYEVVEQVMVDVTNQVGVDLNLAISHEWLFA
PLQFISGLGPRKAASLQRSMVRQQTIFTRKDLLTEHHLGKKVFINAVGFLRVRRSGYTAN
SNTYIDLLDDTRIHPESYTLAQELAKDIYLKDMGEEANDDDEVLEMAIEHVKEKPHLLRL
VNAYEYANEHNRFDKRETLNGIKLELMQGFQDWRRQYVEPSQDEEFYMISGESEDTLSEG
RIVQATVRRVQPQKAICSLECGLTGILSKEDSSDDWRDVNDLTEKMREGDILTCRIKSIQ
KNRYQVFLSCKENDMRNNRYQNNQNLDPYYHEDRTSLQTEKEKARKEKELAKKHFKPRMI
VHPRFKNITADEAMEFLSDKEPGESIVRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKEH
KDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFKTGTKAEVDELLK
IEKSEYPMRIVYSFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEEIDRLV
AYFQRHIDDPHDSGPSIRSVAAMVPMRSPASGGSSGFGSGWGGSSNDSGRRGGQSGDRDR
SYGSGSRAGRNDYRNRNNQDDQSGLPPRPYGGGGRGRGRGRGRGRGNNDNNDGQDSDYGS
QKWSSKEGGGGGWGENQNSPARESWGGGAGGGSGDGGSWGASPSGGWGASPSGGDSWGKD
TGGEAEDSGWGGSKKSGGSGGW
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaacgtgatctccgatgacgaagatgaagtcggaatggaggaagaggag
agggatgatgagccagttgatggggatggagtggatgagcgggaagacgaggatgaagac
gaggaagaagaagaaggtcaggatgaatatgagaaagatgggtttatagtggatgatgta
gaggaagaagaggatgaggatgaagatgatagagctgacagtgatgatgagaggcaaaag
aagaagaaaaggaagaaaagggagtcagagaggaattacgtgcttgatgaagatgattat
gaacttctacaggaaagcaatattgcggtgcctcgtccaaaacttgagagcaaaaagttc
aagcggctaaaaaaagctcagagggatatggaggatgagggttctgttttttatgaggag
gaggagtttggtgaaactggcaggcgagggcgtacagctgagcagaagcttgagcgtagc
ttatttggtgatgatgaagggcaaccacttgaggatattgctgaggaggaagaaaggctg
gaggaagaagaggatgctgacattggtgaggaagatgaaatggcagacttcatcgttgat
gaagaagaagttgatgaacatggtgctcctattagaaggaaaaaggtaaacaaaaagaag
tccaggcaggcagcaggagtttcgtcctctgctctccaggaagcccatgacatatttggt
gatgttgacgaacttttaatgcgtcgaaaacaagatcgggccaaatccagcatgcatgtt
gaatccggtgaatggagtgaaaggagacttgaagacgaatttgatcctactattctagct
gagaaatatatgactgagaaggatgagcacattcggaaaatagatgtccctgaaagaatg
cagatatccgaggaaagcactggtcctgtaacacctgaaaccatcagtatggaagagagt
atctggatctacaatcagcttgttgctggtgttgtgcctctttttaagaagaaagatggt
ggtacatctgatgaagagaaagagctaccaatagataaagatgacattatgcgttttctg
gatttgatgcatgcgcagaagttcgatgtcccgttcattgccatgtaccgcaaggaggaa
tgcatgagcttatttaaggacccagaagaggacggaactagtgatgatggtcctaaaaat
tctgacaaaaaaccttcagtaagatggcataaggtgctttgggcaatccaagatttagac
aggaagtggcgcctccttcagaagcggaagtctgcacttgagttgtactataagaagcgt
tttcaggaagagtcgcgtagggtgtatgatgaaacacgtctaaagttgaatcagcagctc
tttgaatccattactaattcactccaagcgtctgagtctgaaagagaggttgacgatgtt
gactcaaaatttaacttgcacttcccacctggagaggtcggtgtggatgaaggacaatat
aagaggccaaaaaggaaatcacaatacagtatatgcagcaaatccggcttatgggaagtg
gcgagcaagttgggatacagcgccgagcaatttggtagacatatgtctctagaaaaaatg
ggggatgagctggaggatgctagggaacctccagaagagatggcatcgaacttcacctgt
gcaatgtttgaaacacctcaagctgtgcttaaaggcgctagacacatggcagcagtagag
atcagctgtgaaccaagtgtccgtaaacatgtgcgtactacctatatgaaccacgccgta
gtatcaacgagtcctactcctgaggggaatacggtgattgattccttccatcaatttgct
ggagtcaagtggttacgggataaacctctctccgaatttgtggatgcacagtggcttctc
atccagaaggctgaagaggagaaactcctccaagttactatcaagctgcctgaagttcat
cttaaccagctgacaactgactcgaaagatcattatctcagtgacggtgtgagtaaatct
gcccagttatggaacgaacagagaaagttaatactcgaggatgcaatcttcaattttctt
ctgccttcaatggaaaaggaagcaagatccttgctaacaagtaaagcaaagagttgtctt
ctcatggaatatggtaatgttttgtggaataaagtgtcagttggaccatatcaacgcaga
gagaatgatattagctctgatgaagagcctgcacccagggtcatggcttgttgttggggc
catggtaagccagcaaccacttttgtgatgttggattcgtcgggagaggttttggatatt
ctgtatgctggatctcttagccttcgtggccagaatgttaatgatgagcagcggaagaag
aatgatcagcagcgactgttaaaattcatgatggaccaccaaccacatgtggtggtgctg
ggagctgtaaatttgtcttgtacacggcttaaggaggatatttatgagattattttcaag
atggtggaggataatccaagagatgttggtcatgagatggataatctgaacataatatat
ggagacgaatcccttccgcatctctatgagaattcccgcatttctgctgaccagcttcct
acgcagtcaggtattgtgaggcgcgctgtggcattgggacgttatcttcaaaatcctcta
gcaatggtagcaacattatgtggaccagggagggaaattttatcttggaagctgaatact
ttagagagctttctcacaccagacgagaagtatgaggtggttgagcaggttatggtggat
gtaactaaccaggtgggtgttgatcttaatttggctataagtcatgaatggctttttgcc
ccactgcaatttatttcggggctgggtcccagaaaggcagcatctcttcaaagatccatg
gtaagacagcagacaatctttacgaggaaggatctcttaactgaacatcatcttggtaaa
aaggtatttatcaatgcagttggcttcttgcgagtacggcgcagtggatacactgcaaat
agcaatacatatattgatttgttggatgatacaaggatccatccagaatcctatactctt
gcacaagagttggcaaaagatatttatcttaaagacatgggtgaagaagctaatgatgat
gatgaagtgcttgaaatggcaatagagcatgttaaagagaagccacatttgttgaggttg
gttaatgcttatgaatatgctaatgaacataaccgttttgataaaagggaaacccttaat
ggtattaagttggagctaatgcaagggtttcaagattggcgtagacagtatgtcgagcca
agccaggatgaagagttctatatgatttctggtgagtctgaggatacgctttctgaggga
agaatcgtgcaggcaacagttcgtcgggttcaacctcagaaagctatctgttctttggag
tgtggattgactggtattctttccaaggaagactcttcagatgattggagagatgtcaat
gatttgactgaaaaaatgcgtgaaggtgatatcctaacttgcagaatcaagtcaatccaa
aaaaataggtaccaggttttcctgagttgtaaagagaatgatatgagaaataataggtat
cagaataatcagaacttggatccatactaccatgaagatcgcactagcttacagactgaa
aaggaaaaagctcgtaaagaaaaggagcttgcaaagaagcatttcaagccaaggatgata
gttcatcctcgattcaaaaatataacagctgatgaagctatggagttcctctctgacaaa
gaaccgggtgaaagcattgtacgtcccagctcacgtggaccatcatatttgactttaact
ctcaaagtgtatgatggagtgtatgctcacaaggatattgtggaaggtggaaaggaacat
aaggatataacaagcttgctgcgcatcgggaaaacactgaaaataggagaggatactttt
gaagatttagatgaggtaatggatcggtatgttgatccattagtagctcatttgaaggca
atgctaaattaccgtaagtttaagacgggaacaaaggcagaagttgatgagcttttgaaa
attgagaaatctgagtaccctatgaggattgtctatagctttggtatttctcatgaacac
cccgggacattcattttgacttatatacgaagttccaacccacaccatgagtatgttggt
ttgtacccgaaaggatttaaattccgtaagaggatgtttgaagaaattgatcgccttgtg
gcatattttcaaaggcatattgatgatccccatgattccggtccatcaatacgatcagtt
gcagcaatggtgcctatgcgcagccctgcaagtgggggttcctcaggatttggtagcggg
tggggtggttcatccaatgatagtggtcgaagaggtggtcagtctggggacagagatagg
tcttacggttcaggttctagagcaggtagaaatgactacagaaatcgaaacaatcaggat
gatcaaagtggattgccaccaaggccctacggtggtggtggtcggggacgtggtcgtggt
cggggacgtggtagaggaaataatgataataatgacggacaggattcggattatggctct
caaaagtggagttctaaggaaggtggaggaggaggttggggtgaaaaccaaaattcacct
gccagggagtcttggggtggtggtgctggaggtggtagtggagacggaggtagttggggt
gccagtcctagtggtggttggggtgctagccctagtggtggcgacagctggggaaaggac
actggtggtgaggccgaggattctgggtggggtggcagtaaaaagtccggtggcagcgga
gggtggtga
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