KEGG   Solanum lycopersicum (tomato): 101251281
Entry
101251281         CDS       T02665                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
sly  Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:sly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sly03009]
    101251281
Ribosome biogenesis [BR:sly03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    101251281
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML EIF3I WDR55 NBCH_WD40 Beta-prop_HPS5 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_Vps41 Beta-prop_IP5PC_F Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_RIG_2nd Beta-prop_WDR75_2nd Beta-prop_WDR75_1st WDR54 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_LRRK2 Ge1_WD40 Beta-prop_BBS7 Beta-prop_SPT8 PROPPIN VPS11_N Death_2 Beta-prop_WDR19_2nd DUF4987 DUF465
Other DBs
NCBI-GeneID: 101251281
NCBI-ProteinID: XP_004238145
UniProt: A0A3Q7G920
LinkDB
Position
4:65271319..65276058
AA seq 460 aa
MTEPELVIVSSPTDAGIGCWDLHTGAEHLRYRTCSSPSHGLTCVGGRFLASSQLRETKSS
SGSILYWSWNKPQVEVKSFPAEPINPLVSNSEGTYIAGGGASGEIYLWQVATGKLLKKWH
AHYRAVTCLLFNDDQSLLISGSEDGSVRVWSLIMVFDDLLRGKARQPYEFSFSEHSLKVT
DVVIGYGGANAIIVSASEDRTCKVWSLSRGKLLRSIVFPSIIDAIALDPGEDVFYAGGRD
GKIYIAALNAVADPNNNYGLHILGFLSEQSKAITCLALSTDGSLLISGSEDGMVRVWNTK
NHNITRIFRHAKGTINNVVVVRQSSLMSNRGTMNSQMPSVKRHGVSLPPPLEKCANSADE
NDYKAVIGPRIDPDRCVEASYISIQSLSNQILELQRQGSAAAEMEIERLKLDRSRSMQMI
QQWETKFQSLHQFCVTELLDGEKAGNAQGHSLITYTSKTR
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgacggagccggaattggtaatcgtctcatcgccgactgacgccggtattggctgttgg
gacctccataccggcgccgagcatctccgatatcgaacttgctcttcaccttctcacggc
ctcacctgtgtcggcggccgctttctggcctcctctcaactccgtgaaactaaatcttcc
tctggatctatcctgtactggtcatggaacaagcctcaagtggaagttaaaagcttccca
gccgaacctataaatccacttgtttccaatagtgagggaacttatatagccggaggaggt
gcatccggcgaaatttacttgtggcaggttgcgactgggaaactgctaaagaagtggcat
gctcactatagggcggttacttgcttgttattcaatgatgatcaatcacttctgatttct
ggttcagaggatggatctgttcgagtttggtctcttataatggtatttgatgacttgttg
agaggtaaagcaagacaaccttatgagtttagtttctctgagcattctttgaaggtgact
gatgttgtgattgggtacggcggagctaatgcaattattgtatctgcttcagaagataga
acttgcaaggtttggagtctttctagaggaaaattgttgagaagcattgtgtttccatca
ataattgacgcaattgcattagaccccggagaagatgtcttctatgctggtggtagagat
gggaaaatatacatagctgcactaaatgctgttgcagaccccaacaataattatggattg
cacattcttgggtttctctctgagcaaagcaaggctattacatgcttagcattaagtacg
gacggcagcttgctaatttctggatcagaggatggcatggttcgagtgtggaacaccaaa
aaccataacatcacccgaatttttaggcatgctaaaggtacaattaacaatgttgtagtt
gttagacaatcatctcttatgagcaacagaggaaccatgaattcccaaatgccttctgtt
aagagacacggggtatcattacctccaccattggaaaaatgtgctaactcagctgatgaa
aatgactataaggcagtaattggcccccggatcgatcctgatagatgtgttgaagcttca
tatatcagtattcagtccctaagtaatcaaatcttagaacttcagagacaaggttctgct
gctgctgaaatggagatcgaaaggctaaagctcgaccgcagcaggtccatgcaaatgatt
cagcagtgggaaacaaagtttcaaagtctacatcagttttgtgtaaccgagctattggat
ggggaaaaagctggaaatgctcagggacacagtcttataacatatacttctaaaacacgt
tga

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