Solanum lycopersicum (tomato): 101251283
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Entry
101251283 CDS
T02665
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sly04131
]
101251283
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sly04147
]
101251283
Membrane trafficking [BR:
sly04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
101251283
Exosome [BR:
sly04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101251283
Exosomal proteins of bladder cancer cells
101251283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
101251283
NCBI-ProteinID:
XP_004238316
UniProt:
K4BVH7
LinkDB
All DBs
Position
4:complement(66935081..66940715)
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHSRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSLFYVKDRFLRVYEYSTQKENQLIPIRRPG
SNSLNQGPRTLSYSPTENAILICSDVDGGSYELYIIPKDTYGRGDTVQDAKRGTGGSAVF
VARNRFAVLEKSTNQVLVKNLKNEIVKKSPLPTATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRIVLGELQTPFIRYVVWSSDMESVALLSKHSIVIADKKLVHRCTLHETIRVKSGAWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPVYISKIYGNTIFCLDRDGKNRPIIIDSTEYI
FKLALLRKRYDQVMSMIRNSELCGQAMIAYLQQKGFPEVALHFVKDELTRFNLALESGNI
EIALESAKKLDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYLITGNLDKLSK
MMKIAEVKNEVMGQFHDALYLGNVRERVKILEEAGHLPLAYITANVHGLKDTAEHLAEKL
GDNVPSLPKDKKASLLQPPTPILGGGDWPLLMVTKGIFEGGLDSTVRGGHEEYEEAADAD
WGESLDIGEVENLQNGDISMVLDDEEGKEENDEEGGWDLEDLDLPPDTDTPKTASNARSS
VFVTPNPGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLSRQLGIKNFSPLKQLFADLHMG
SHTYLRAFSSAPVISLAIERGWSESASPNVRGPPALIFNFSQLEEKLKTAYRATTSGKFS
DALRLFLSILHTIPLIVVESRREVDEVKELIVIVKEYVLGLQMEVKRKESKDNPVRQQEL
AAYFTHCNLQLPHLRLALQNAMSICYKASNLSSAANFARRLLETNPTNESQAKTARQVLQ
AAEKNMRDATELNYDFRNPFVVCGATYVPIYRGQKDVTCPYCTTHFVPSQQGQLCTVCDL
AVVGADASGLLCSPSQVR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagtttgaaacgaagagtaatcgagtgaaagggctcagttttcatagcaaa
aggccatggatcttagctagtcttcatagcggtgtgatccagctttgggattaccgtatg
ggaactcttattgatcgatttgatgaacatgatggccctgttcgtggcgttcattttcac
aagtctcagcctctttttgtatcaggaggagatgactataagataaaggtctggaattat
aagctgcatcggtgcttgtttacgctgcttggacatcttgattatattcgcactgtccaa
tttcatcatgagtatccctggattgtcagtgcaagtgatgatcagacaatcaggatatgg
aactggcagtctcgcacttgtatttctgtcttgactggacacaaccattatgtgatgtgt
gccctatttcatcccaaagaggacttggttgtctctgcatctttggatcagactgttcgg
gtctgggatattggtgctctaaggaagaaaactgtttctcctgctgatgacatcttgcgc
ttgagccagatgaatacagacttctttggtggagtagatgctgttgtgaagtatgtcttg
gagggtcatgatcgaggagttaactgggcttcatttcaccctacattgcccctaattgtg
tctggtgcggatgatcgccaggtgaaaatctggcggatgaatgatacaaaggcctgggag
gtggacacattgagaggccatatgaacaatgtatcttgtgttttgttccattcaaggcaa
gatattattgtttccaattcagaggataagagcattcgagtgtgggatgctacaaaaagg
actggtctccagactttccgcagggagcatgacagattttggatccttgcagctcatcct
gagatgaatcttctagcagctggtcatgacagtgggatgatagtgtttaagttggagaga
gaacgccctgctttttctgtgagcggtgattctttgttttatgtgaaggatcgatttctc
cgtgtgtacgagtattcaactcagaaggagaatcagttgataccaattagaaggcctggt
tcaaacagtctgaaccaaggtccacgaacgctttcctacagtcctactgagaatgctatt
ttgatctgttcggacgttgatgggggctcctatgaactatacattatacctaaagacact
tatggtaggggtgatactgttcaagatgccaaaaggggaactggaggatcagcagttttt
gttgctcggaacaggtttgcagtgcttgagaaaagcaccaaccaagtcctggtcaagaat
ctgaagaatgaaattgttaagaaaagccctctgcctactgctactgatgcaatattctat
gctggcacaggaaacttactgtgcagggcagaggacagagttgttatctttgatctgcag
cagagaattgttcttggagagctgcagactcctttcatcaggtatgtcgtttggtcgtcc
gacatggaaagtgttgctttgcttagcaagcattccattgtaatagctgacaagaagctt
gtgcaccgttgtactcttcacgagacaattcgtgtcaagagtggtgcctgggatgacaac
ggggtcttcatttataccacacttacccacatcaagtactgtcttcccaatggcgatagt
ggaatcatcaaaaccttagatgttccagtctacatttctaagatatatgggaacactatt
ttttgcttggatcgagatgggaagaaccgtcctattattattgattcaactgaatatatt
ttcaagctggctttgcttagaaagagatatgaccaggttatgagtatgataagaaattcc
gagctttgtggtcaagccatgattgcctatttgcagcagaagggttttcctgaggttgct
cttcattttgtcaaggatgagcttactcgtttcaacttagcacttgaaagtgggaacatt
gagatagctcttgaatctgctaagaagcttgatgagaaggatcattggtataggctcggg
gtggaggcccttcgacagggtaatgcaggtattgttgaatatgcctaccagaagacgaag
aactttgagaggctctctttcctttatctaataacaggaaacctggataagttgtcaaaa
atgatgaaaattgctgaggtaaaaaatgaagttatgggtcaattccacgatgccttgtac
cttggtaatgttcgtgagcgtgtcaagattttggaggaggctggtcatcttccccttgca
tacatcacagcgaatgttcatgggctgaaggatactgctgagcatcttgctgaaaaactg
ggtgataatgttccatcattgccaaaggataagaaagcatctctcttacagcccccaact
cccattttgggtgggggagactggcctctactgatggtcacaaaaggtatatttgaaggt
ggtttggattctacagtcaggggcggacatgaggagtacgaagaggctgcagatgctgat
tggggtgagtcactggatattggtgaggtggaaaatctgcagaatggggatatcagtatg
gtgctggatgatgaagaaggaaaagaagaaaatgatgaggaaggaggatgggatcttgag
gatttggatctgccacctgatactgacacaccaaagactgcttccaatgcccgctcttct
gtttttgttaccccaaaccctggcatgcctgtcagccagatttgggtccaaaaatcatct
cttgctgcagaacatgcagctgctggcaatttcgatactgctatgcgtttgctgagccga
caactagggattaagaacttctctccgttaaagcaattgtttgctgatcttcatatggga
agccatacatatctccgtgccttctcatcggcaccagttatctctctggcaattgagaga
ggttggagtgagtcagctagtcccaatgtgcggggtccacctgccctcatcttcaatttc
agtcagctcgaagaaaaacttaaaactgcctacagagccactacttctgggaaattctct
gatgctcttagattattcctgagcattcttcacaccattcctttaattgtggttgagtca
agacgagaggtggatgaggtcaaggaattgattgtcatagtgaaggagtacgttttaggt
ttgcagatggaggttaagaggaaggaatcaaaagacaaccccgttcgtcagcaggagttg
gctgcctacttcacacactgtaatctgcagcttccacacctgaggctcgcattacagaat
gctatgtctatctgctataaggcaagcaatctcagctcagcagccaactttgctaggaga
ctgttggagacaaatccaaccaatgaaagccaagcgaaaacagcccgccaggttcttcaa
gcagctgagaaaaatatgagagatgctacagagttgaattatgacttcagaaatccgttt
gtggtctgtggcgcaacatatgtccctatttacagagggcagaaggatgtcacttgccct
tattgtactactcattttgttccatcccagcaaggacagctttgtactgtttgtgatctt
gcagttgtaggagcagatgcctctggcttgctttgctcaccttcacaggtcagataa
DBGET
integrated database retrieval system
