Solanum lycopersicum (tomato): 101251518
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Entry
101251518 CDS
T02665
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03022
Basal transcription factors
sly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101251518
09124 Replication and repair
03420 Nucleotide excision repair
101251518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101251518
03400 DNA repair and recombination proteins [BR:
sly03400
]
101251518
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101251518
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101251518
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
SHOCT
Motif
Other DBs
NCBI-GeneID:
101251518
NCBI-ProteinID:
XP_010327201
UniProt:
A0A3Q7IAY0
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Position
10:965694..974826
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AA seq
608 aa
AA seq
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MLNSKYWSSMADGKVVKRAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTTKLNVEFKL
IKGHKSSKECSSKQALLNLTQAQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKATSE
KPAVPHDEQLSATEMGRRIKLLQENSELQNLHRELVIAGILSETEFWAARKKLLEQSENK
KPKQRVALKNDMWSVKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEK
EFWTKYSRAEYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEA
DEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLQGRVIDVELGDTRS
VAEAFTRTNQAEQATEVSDENAYRERVKKVSRVAEIEDLQGPRDPPVALLSIKDPRDYFD
SQQANAIKALGDAETGIRQLKFRVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFN
LLSQNISSTKYHLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYA
KVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADLQKRSARS
GERPNGFV
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgctgaattcgaagtattggagtagtatggccgatggtaaggtggttaagcgtgccaag
tacaaaacttcagtcaaggttcctggcgtccctggcgttttgaaattgaccaaggaacgg
ttttattttatgccgaatgacccaacattaactacaaagcttaatgtggagttcaagttg
attaaaggccacaagtcttccaaggagtgttcaagtaagcaggctctacttaatctcaca
caagctcagggtggaaattatcttttcgaatttgatagcttccctgaccgtgaccagtgt
cgggactttgttgcctcagcaattgcagcttgtggggaaatagggaaagctacttccgaa
aaacctgctgttccacatgatgagcaacttagtgcaacagaaatggggcgtcggattaag
ttactgcaggagaacagtgagttgcagaatctccacagggaattggtcattgcaggtatt
ctatcagagactgaattttgggccgctaggaagaagctgctggaacagagtgaaaataag
aagccaaaacagcgagtagctttaaaaaatgacatgtggagtgtaaaaccattatctgat
ggtcagacaaacagagttacatttaacttgactccagaggttattcatcagatttttgcg
gagaaaccagctgtccgccaagcatatctgaagtttgttcctggcaagatgtcagaaaaa
gaattctggactaaatattcaagagctgaatacctccacagtacaaaaaacattgttgca
gctgctgcggaggctgctgaagatgaggagcttgcagttttcttgaagcaagatgatatg
ttagtatctgaagctcggaggaagatcagaagagtggatccaactctggacatggaagca
gatgaaggtgatgattatatgcatctcccggatcatggactacctcagggtgaaactaag
gagattctagaaccacagtatgaaccattcaaaaggtctttctcacaatacctcaatcag
catgcagcagtggttcttcaaggaagagttatagatgttgagctgggtgacacaagatct
gttgctgaagctttcaccaggacaaatcaggctgaacaagctactgaagtgtctgatgag
aatgcatatagagaacgcgtaaaaaaagtttctcgagtagctgagattgaggatcttcag
ggacctcgagacccaccagttgcattgctaagtatcaaggatccccgagactactttgat
tctcagcaagcaaatgcaataaaggctttgggagatgctgaaacagggataagacagttg
aaatttcgtgtgagcaaagaagaagccttttgctccttgaaggactccatttctgagata
aattctcaaggtttgattgaaccaataattagtcctgaagtagctctcaaggttttcaac
ttgctaagtcagaatatctcaagtacaaaatatcatctgggaaagaatccccatgagagt
gtgttagatcagttgcctagtgcaactaaaaatgagctattacttcattggacatcaatt
caggaattattgaagcacttctggtcatcttatccgataacgacaaaatatttctacgcc
aaggtgactaggttaaaggatgcaatgtctcagatatatcccaagttgcaggagatcaag
gaatctgtgcaatcagatgtcagacaccaagtttcccttcttgtacagccaatgcttcag
gctttggatgctgcctttgcccattacgacgcagatctacagaagagatctgccagaagt
ggtgagagaccaaatggatttgtttag
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