Solanum lycopersicum (tomato): 101251630
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Entry
101251630 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101251630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101251630
03036 Chromosome and associated proteins [BR:
sly03036
]
101251630
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101251630
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101251630
mRNA degradation factors
5'-3' decay
Decapping complex
101251630
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101251630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
101251630
NCBI-ProteinID:
XP_004248580
UniProt:
A0A3Q7J7Z7
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All DBs
Position
10:5721797..5737242
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AA seq
491 aa
AA seq
DB search
MNPRGRYPPPGMGSGGGGGGRGGGNMYPNANPNFQPRNPQQYVQRGPVNQQQQFQNQQAQ
QWLRRNQLASDSTVDEVEKTVQSEAVDQSSQDWKARLKIPPADTRYRTEDVTATKGNEFE
DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID
QDVNAIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLV
GTPGRILDLARKGICVLKDCSMLVMDEADKLLSPEFQPSIVQLIRFLPANRQVLMFSATF
PVTVKDFKERYLQKPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIF
CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI
QAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI
PPHIDQAIYCL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagaggaagatatccaccgccgggaatgggaagcggcggcggaggcggcgga
cgcgggggcggaaacatgtaccctaacgctaaccctaattttcaaccgagaaatccacag
cagtatgtgcagagaggtccggtgaaccagcagcagcagtttcagaaccaacaggcacag
caatggctcagaaggaaccagttggcatctgattctacggttgatgaggttgaaaagacg
gtacaatctgaagcagttgatcaaagttcacaagactggaaggcgaggttgaagatacca
ccagcggatactagatacaggacagaggatgtgacagcgaccaagggaaatgaatttgaa
gactattttcttaagcgtgaattgcttatgggaatttatgaaaagggttttgaaagacca
tctccaatccaggaagagagtatcccaattgctcttactgggagtgatattttggcgagg
gccaaaaatggaacagggaaaactgctgccttctgcattccggcattggaaaaaattgac
caggacgtcaatgccattcaagttgttatccttgttcctacgcgagaattggctcttcaa
acatctcaagtttgcaaagaacttgggaagcacttaaaaattgaagtcatggttaccact
ggggggaccagcttgaaggatgatataatgcgactctatcaaccggtacatttactagtt
ggaacccctggaagaatactcgaccttgcgagaaagggaatatgtgttttgaaagattgt
tccatgcttgtcatggatgaggctgataagcttctttctccggagtttcaaccttccatc
gtgcagctgattcgtttcttgccagcaaatcgtcaagttttaatgttctcagctacattc
cctgtcacagtcaaggactttaaagaaagatacttgcagaagccatatgttatcaacctt
atggatgaacttactctcaagggtataactcaattttatgccttcgtagaggaaaggcag
aagcttcattgccttaacactttattctcaaagcttcaaatcaaccaatcaattatcttt
tgcaactctgtaaaccgtgtggaactgcttgccaagaagatcacagaattaggctattca
tgcttctacatccatgcaaagatgcttcaagatcataggaacagagtatttcatgacttc
cgtaatggtgcctgcaggaaccttgtttgtactgatctgtttactagagggatagatatt
caagcagtcaatgttgttataaattttgatttcccgaagaactcagagacatatttacac
agggttgggcgatcagggagatttgggcatcttggtttagctgtgaacctgattacttat
gaggatcgcttcaacctgtacagaattgaacaagaactaggaacagagatcaagcaaatt
cctccgcacatagatcaggctatatattgcctttga
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