Solanum lycopersicum (tomato): 101251966
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Entry
101251966 CDS
T02665
Name
(RefSeq) ubiquitin receptor RAD23b isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03420
Nucleotide excision repair
sly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101251966
09124 Replication and repair
03420 Nucleotide excision repair
101251966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
sly03051
]
101251966
03400 DNA repair and recombination proteins [BR:
sly03400
]
101251966
Proteasome [BR:
sly03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
101251966
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
101251966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
CUE
Rad60-SLD
TECR_N
UBA_3
Ubiquitin_2
HEPN_Toprim_N
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
101251966
NCBI-ProteinID:
XP_019068681
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Position
3:complement(63666014..63670549)
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AA seq
366 aa
AA seq
DB search
MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLL
ENNVSEDGFLVVMLSKSKTASSSGTTSAQQPATAANPTTTPEVIPPSQAPKDVVSASDAA
AASLPADDYSQAASNLVAGNNLEQTIQQLMDMGGGSWDKETVTRALRAAYNNPERAVDYL
YSGIPETAEVSVPVARGGVNSAAVPTAAPIAPSSGAPNSAPLNLFPQENVAGGGGAGLGS
LDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRSIQEHDQEFLQLINEPVDGS
DGDMFDQAEQEIPHTVSVTPEEQEVIERLEAMGFDRALVIEAFLACDRNEELAANYLLEH
AGDYED
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcactgtaaagactctcaagggaagtcactttgaaattagggttcagccatct
gatacgattatggcagtcaagaagaacattgaagatgtacaaggaaaagataattaccca
tgtgggcagcagttgctgattcacaatggtaaagtgctgaaagatgaaagtacattgttg
gaaaacaatgtctctgaggatggttttcttgttgtcatgcttagcaagagcaaaactgct
agctcaagtgggacaacttctgctcagcagccagcaactgccgcaaatcctactacaaca
cctgaagtgattccgccatcacaggccccaaaagatgttgtgtcagcttcggatgctgcg
gctgctagtcttccagctgatgattatagtcaagctgcatcaaatttagttgctggcaat
aatctcgagcaaactatacaacaacttatggatatgggtggtggcagctgggacaaagag
acagttactcgtgcacttcgagctgcttataacaatcctgaaagagctgttgattactta
tattcaggaattcctgaaacggcagaagtttctgtaccggtagcccggggtggagttaat
tctgctgctgtgcctactgctgcgcctattgcaccttcttctggcgcacctaattctgct
cctttaaatttgtttcctcaggagaatgttgctggtggtggcggtgctggtcttggatcc
cttgattttctcaggaacaaccaacagttccaagctttacgttccatggttcaagctaac
ccacaaattttacagcctatgcttcaggaactaggaaagcaaaatcctcaacttttaaga
tctatacaagagcatgatcaagagtttcttcaattaatcaatgaacctgtggatggttct
gatggggacatgtttgatcaggctgagcaagagattcctcacacagttagtgtgactcca
gaagaacaggaggtgattgagcggctggaagcaatgggttttgatagagctcttgtcatt
gaagcttttttggcttgtgatcgcaatgaggaactggctgccaattatctgttggagcat
gcaggagattatgaagattaa
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