Solanum lycopersicum (tomato): 101252104
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Entry
101252104 CDS
T02665
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101252104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101252104
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
101252104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
101252104
NCBI-ProteinID:
XP_004245838
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All DBs
Position
8:63743909..63749822
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AA seq
1084 aa
AA seq
DB search
MDSGDVALPRRRTRQQLLKYWVELIDKRNSLGRTGNPTQSSTCSVNIGEDESCGRKRDRV
EENTDSADGKRKMGKSEDGSMVKVDNGRSNFSPGTCESITKPSFIHEISDDDGEEEGKEN
DVLIGEAAAGSAVNTGSCSVSWSNVGSVGLRSPMLNVADEVVSSTSSMCWTAEKSEEVAD
TIASSESESEASSDEDNDDSKDENYQVKESSSSSESDDVRSDTLKDDEESKDGNTSKDDD
LSCPTEQEHHEEGNKESNGEELVPQLAVKGEKNNKGRSYLLRPRSLPKSKKKKLNHGNCS
SPILLSESSSEEDCDVDESVQNVVQKDAVRKVRKTRKKILKDSEFLKFVVDSMINVDDHD
ELTLPEEKEQKEQVPVKETLPLIFRFEDEEPLPPEKEEWEKGVDDLFVEMDMCILESRIG
FTNPSDSPIQSEKTSGCQMGNHQLFLDEQIGLICKVCSHVHLESKYIFPPFAERTRGRHE
RKYFGESPSLWDVDGFKFYDSSAVHDAAIYGEGTVWDLVPLSAKTTMYPHQREGFEFMWT
NIVGDMYLEKLKEPISGNRGGCIISHPPGTGKTRLTIVFLQAFLKQFPKCRPVIIAPSNL
LLNWEAEFQKWEVDIPFHNLNSKDFSSQEDEATVSVFHCLSRAGKNNPHLIRMVKLRSWA
KSKSVLGISYDLFRILTGEDGDSYATEIKEILLKLPGLLVLEEGHTARNDQSLVWKALNK
IETEKRILLSGTPFQNNIKELYNTLCVVSPKFAADLEHKWAYLSSSIDKNVRALEELRDM
IAPLVHKCSENVKKVSLPGIRDIVIHLKPTHLQKELLKRIPEFPGSFYEQNMVSLISVHP
SLVATRKEFADLESQLKERGCRLDPDNGVKMKFVVELIRLCGGLKERVIIFSQLLDPLNL
IKEQLHSLFGWTLGREILYMDGKLDVKQRQISINSLNDPKSDVKVLLASIKACSEGISLI
GASRVVLLDVLWNPSVEQQAISRAYRNGQTKFVHVYCPVSSKWEVDKIEQQTKKKYHSDV
IMSRNKVNTFKMDPACSVSEDTILESMVKHECLRHIFEKLSHAPRVVPPTTCFNSCNRPS
KLSC
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatgtggctcttccaaggagaaggactagacagcaattgttgaaatat
tgggttgagttaattgataaaaggaatagtttgggtcgaactggtaatcctactcagtct
tcgacttgttcggtgaatattggagaggatgagagttgtgggaggaaaagagatagggtg
gaggagaatacagattctgcagatggcaagagaaaaatgggaaaatcagaagatggaagt
atggtaaaggtagacaatgggaggagtaacttcagcccaggaacttgtgagtccattacg
aaaccgtctttcatccacgaaatatctgatgatgatggggaggaggaggggaaggagaat
gatgttttaattggggaggctgctgcaggctctgctgtaaatactggatcatgttcagta
tcttggtccaatgtggggtctgttggattaaggagtcctatgttgaatgtagcagatgag
gttgtttcatctacctcaagcatgtgttggacagcggagaaatcagaagaggttgctgat
acaattgcatcttcggagtcagaatctgaagcttcaagtgatgaggataatgatgactcc
aaggatgagaattaccaggtgaaagaatcatcaagttctagcgaatctgatgatgtaaga
agtgatacattgaaagatgatgaggaatcaaaagatggtaatacatcgaaagacgatgat
ctgagttgtccaacagagcaagaacaccatgaagaaggaaacaaggagtcaaatggtgag
gagctagtacctcagcttgctgttaagggtgaaaagaacaacaaaggtcgatcatatctt
cttcggccacgctcacttcctaagtccaaaaagaagaagttaaaccatggaaattgtagc
agcccgattcttcttagtgaatcctcgtctgaggaggactgtgatgttgatgagtcggtg
caaaatgttgttcaaaaggatgctgttcgaaaggttagaaagactcggaagaagattctt
aaagattctgaatttctgaagtttgttgttgattctatgataaatgttgatgatcatgat
gaactaactcttcctgaagagaaagaacagaaggaacaagttcctgtcaaagaaacactt
cctttgatattccggtttgaagacgaggaacctcttcccccagagaaagaagaatgggaa
aagggagttgatgatctttttgttgaaatggacatgtgtatcttagaatcacgtattggc
tttacaaatccatctgattcaccgatacaaagtgaaaaaacaagtggctgtcagatgggg
aaccaccagctttttctagatgaacaaattggactcatctgtaaagtttgttcccatgtg
catttggagagcaagtacatcttccctccatttgctgagagaacccgagggaggcatgaa
agaaaatattttggagagtcgccatccctctgggatgttgacggcttcaaattttatgat
tcttctgccgttcatgatgctgctatttatggggaaggaactgtgtgggatttagttccc
cttagtgccaaaacaacaatgtatcctcatcagcgtgaaggatttgagttcatgtggaca
aacattgttggagatatgtatcttgagaagctgaaagagcctatatctggtaatagggga
ggatgcataatctcacacccacctggcacaggaaaaacccgtctcactatagtatttctt
caggcatttttgaagcagtttccaaagtgtcggcctgtaatcatagctccatccaatttg
cttcttaactgggaagccgagttccaaaaatgggaggtcgacattcccttccacaacttg
aacagcaaagatttctcttcccaggaagatgaagctactgttagtgtcttccactgttta
tcccgtgccggaaaaaacaatccacaccttatacgtatggtgaagctgagatcctgggct
aaaagtaagagtgttttgggaattagttatgacttgttcaggattctcacaggagaagat
ggagacagttatgccacagagattaaagaaatacttctaaagttacctggtcttctggtc
cttgaggaagggcacactgctcggaacgaccaaagccttgtgtggaaagctttgaataaa
attgaaacagagaagcgcatactcttgtctggaactcctttccaaaataacatcaaagag
ttgtacaacaccttatgcgtagttagtccaaaatttgctgcagatttggagcataaatgg
gcttatcttagcagttccattgacaagaatgtcagagcattggaagagcttagggatatg
attgcaccactagtccataaatgtagtgaaaatgtgaagaaggtaagccttccgggtata
agggatattgtgatacatttgaagcccacacatttgcagaaggagttgcttaaaagaatt
ccagagtttccaggctccttttacgaacaaaatatggtgtctctaatctctgttcatcct
tcattagtggcaacgaggaaggagttcgctgacttagaaagtcagctaaaagaaagagga
tgtcggttggatccagataatggagtaaaaatgaaatttgttgttgaactaatcagactc
tgtggtggattgaaggagagggttataatatttagccagttacttgatcctctaaacttg
atcaaggagcaactccattctctctttggctggactttaggccgagagatcctctatatg
gatggaaaacttgatgtaaagcagcgacagatatcaataaattctcttaatgatcctaag
agtgatgtaaaagtgcttcttgcatcaataaaagcctgttcagaaggaataagtcttata
ggggcctcaagagtggttttgcttgatgttctctggaatccctcagtagaacagcaagcc
atcagtcgagcctacagaaatggtcagactaaatttgttcatgtgtactgcccagtgtcg
tcaaaatgggaggtggacaagatcgaacagcagaccaaaaaaaaatatcattcagatgta
attatgtctaggaataaagtgaatactttcaagatggatcctgcatgttctgtctcagag
gataccatactagaatccatggttaagcatgagtgcctccgtcatatttttgaaaaacta
tctcatgcaccacgtgtggtgcctcctactacatgctttaattcttgtaacagaccttca
aaactgagctgttag
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