Solanum lycopersicum (tomato): 101252541
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Entry
101252541 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38 isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101252541
03015 mRNA surveillance pathway
101252541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101252541
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101252541
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101252541
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Thi4
Phage_186_Dhr
DUF8160
Motif
Other DBs
NCBI-GeneID:
101252541
NCBI-ProteinID:
XP_004249589
UniProt:
A0A3Q7JGX3
LinkDB
All DBs
Position
10:64037827..64043226
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AA seq
508 aa
AA seq
DB search
MADTSSTSGITSSTAASTTANPPESKSWADQADEIDQAEQSADQAEQSSASNEEGATAEI
NIGSLQVDESKRENSTLSEPEDSSIQAVTSGDTMYKSAKRFEDLNLSPELLKGLYVQMQF
ERPSKIQEISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCICPTR
ELAIQNMEVLLKMGKFTGITSELGIPADSANYIPISKRPPVTAQVVIGTPGTINKWVTAR
KLGMSCMKILVFDEADHMLAESGFQDDSIRIMKAIVKASANCQVLLFSATFGENVKAFVT
KIVQDLFVQDYNQMFVKKEELSLDSVKQYKVQCPDELSKIMVIKDRILELGQKVGQTIIF
VRTRNSASMLHKSLVDYGYEVTTIQGALRQEDRDKIIKEFKDGLTQILISTDLLARGFDQ
SQVNLVVNYDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNMLMSKIEN
HFNHQVAEIPSWSNEEDFENALKIAGLL
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacttctagtacctccggtatcaccagtagcaccgccgcttctacgacggca
aacccaccggaatccaaaagttgggcagaccaagccgacgagatcgatcaagctgagcag
tcggcagaccaagctgagcagtcttccgcttcgaacgaagaaggcgctactgccgagata
aatatcggatctttacaagtcgatgagtccaaaagagaaaactccactctctctgagccg
gaagattcaagcatacaagcggttacatctggcgatactatgtacaaatcagcgaagaga
tttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagttt
gagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccctacaag
aatcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatg
ttgagtcggattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccaga
gaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataaca
tcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcct
gtcacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacggcaagg
aaactgggcatgagttgtatgaaaattcttgtgtttgatgaagcggaccacatgttggca
gagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagtgct
aactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcaaagcatttgtgaca
aaaattgttcaagatctttttgtgcaagattacaatcaaatgtttgtgaagaaagaagaa
ctttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatc
atggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaatcatattt
gttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaa
gtgacaacaattcaaggtgctcttaggcaagaagacagagacaaaataatcaaggagttc
aaagatggattgacacaaattcttatatcaactgatcttcttgctcgtggatttgaccaa
tcacaggttaatttggtggttaattatgacctccctgtgagacacgagagtccaacagag
ccagatcatgaggtatacctgcatcggattggtagagcaggacgttttggacgcaaaggt
gcgatattcaacttgctgtgcagtgacagagacaacatgctaatgtcaaagattgagaac
catttcaaccatcaagtggctgagattccctcatggagtaatgaagaagatttcgaaaat
gctctgaagatagctggcttgctgtaa
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