Solanum lycopersicum (tomato): 101252661
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Entry
101252661 CDS
T02665
Name
(RefSeq) oligouridylate-binding protein 1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101252661
03041 Spliceosome [BR:
sly03041
]
101252661
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
101252661
Spliceosome [BR:
sly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
101252661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_PARP14_3
RRM_occluded
Cas_Cas2CT1978
RRM_8
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
101252661
NCBI-ProteinID:
XP_004251700
UniProt:
A0A3Q7J401
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Position
12:complement(2931376..2937683)
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AA seq
401 aa
AA seq
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MMQQQRLKQQQGLMQQSLYHPGLIASPQIEPILSGNLPPGFDSTTCRSVYVGNISSQVTE
QLLQEVFSSTGPLEGCKLIRKDKSSYGFVDYFDRQSAALAIVSLNGRQLFGQCIKVNWAY
ASAKREDTSNHFSIFVGDLSPEVTDSTLFACFSVYPSCSDARVMWDQKIGRSRGFGFVSF
RDQQEAQSAIDDLNGKWLGSRQIRCNWAAKGAGASNDNRSSDAKSAVELTTGTSDDGQLK
ANEDAPENNPQYTTVYVGNLAPDVTTIDLHRYFHALGAGVIADVRIQRDRGFGFVRYSNH
AEAARAIQLGNARILFGKPIKCSWGSKPTPPGSSTNPLPPPVIRQLPGISAMGLAMYERQ
VALARMTGMQTLMQHQGQRIGVASQVLYDGGIASPQPPVYY
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaacagcaaaggctgaaacaacagcaaggattgatgcaacaatccctttatcat
cctggtctcatagcatcccctcagatagagcccatcttgagtggaaatctgcctcctgga
tttgattcaactacttgcaggagtgtgtatgttggaaacatcagttctcaagtcacggaa
caacttcttcaagaggttttctcaagtaccggtccccttgagggttgtaagcttataagg
aaggacaagtcgtcctatgggtttgtggattattttgatcgccaatcagctgcgcttgct
attgtgagcctcaatggaaggcaattgtttggacagtgtataaaagttaactgggcttat
gccagtgctaaaagagaggacacatcaaatcattttagcatatttgttggtgatcttagt
ccggaggttacagattccacactgtttgcgtgcttttcagtataccctagctgctcagat
gcaagagtgatgtgggatcagaaaataggccggtctagagggtttgggtttgtttccttt
cgtgatcagcaggaagcccaaagtgcaatagatgacttgaatggaaagtggcttggaagc
cgacaaatccgctgcaactgggcagcaaaaggtgctggagccagtaatgacaaccggagt
tcagatgctaaaagtgctgttgagttgacaactggaacatcagatgatggtcaactgaag
gccaacgaagacgctccagaaaataatccgcagtacacaactgtatatgttggcaacctt
gctcctgatgtcactaccattgacctccatcgttattttcatgctcttggggctggtgtt
attgctgatgtccgtattcagcgagacagaggatttggctttgtacgatacagcaatcat
gctgaagcagctcgagcaattcaattaggaaatgctcgaatcctctttggtaaacctatt
aagtgctcatggggaagcaagccaactccaccaggaagcagcacgaaccctctaccacct
cctgttatcagacaactccctggtatttcagccatgggtcttgcgatgtacgagaggcag
gttgctttggctaggatgactggtatgcagactctcatgcaacaccagggacagcgaatt
ggcgttgctagtcaggttctgtatgatggtggcattgcttccccgcagccaccggtatac
tactag
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