Solanum lycopersicum (tomato): 101252933
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Entry
101252933 CDS
T02665
Name
(RefSeq) nuclear pore complex protein NUP160
KO
K14303
nuclear pore complex protein Nup160
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101252933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101252933
03036 Chromosome and associated proteins [BR:
sly03036
]
101252933
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101252933
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
101252933
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
101252933
NCBI-ProteinID:
XP_010314086
LinkDB
All DBs
Position
1:complement(87215232..87237713)
Genome browser
AA seq
1487 aa
AA seq
DB search
MGSQSCLAGMEVPIIGSDSVKFVQLSVPSSTSTSVSSPTPPTAARDVGSCSIIGNPPAYF
TWKICRSHPNVLEIMEFCGHKEFPKTGLQIVFPEALFPFAVICKNEMALSSVKPYLLHAM
TVSGVAYLIKLENISNYVSSSHLQSGDFVDFNTLTNPHQGAATAVAAIAELMVVGRSDGS
VGFFQLGILDQQAPGFVQELRDDSGLGRLWGVLSRGRSNAAVQDLVISEFHQKKLLFVLH
SDGNLRVWDLSNRSRIFSHSLSVSPSAGSTFVRICVGNDHNNPDAIPMAVLQKNDSEVGT
AVISLYNLHLSTGDRINLLLDPSTKSISLEEGDLIDIKLTPNKLWILRENGLVMKELSCQ
NRNEELAHCYSLQDAFVAEQLFQGSENSSDDLLWLSHTVLSSSKDQISPFVSSVFLQRLL
LPGVYHRNVLRVTLQYFSKHFTDSEFDSLTVDGLRNEILSVIQHEVGADSPISVLQSWKT
FCTCYFNNWCKTNVACGLLIDSATQAVGVIRKNSVSMCRSLEDIELLVFASGSSGEHGNI
ICSRFDSSDSDLEREILFEILQCVNTLRQQLGKAAPAIFYESLLRTPSLSSEEVIPRLLK
NLDSGYSSSMALHLSELGTDVALNKEISYHKSLRKFSVDMFLSLHNLCSRATTWRSVLHV
IESYLKFLVPRKYEHNLDSEGLFTVSTALTVQATSQVAKVMFESALDVHLLLSYMVNSSS
QIGMLEDEVLKVKLELVPMIQEVITEWHIINFFSTTPSESPLLEDFSSQLSSLQLDGNVD
RRSWNEKLGKSEFTLAFILLLGGRSGPSFGHLPDPNSLSKSVQEFASWIMWGRTEAEPSV
FFSHSIGLALVLLRHGQYDAVEYVLSLVDTYSRTEKICLSLQSDGGEWSTLLHLLGCCFI
AQSQRGLHGLKKERKISEAVRCFFRAASVEGAANALQSLPNEAGWLHLGFSQQVSPAAWK
LHYYQWAMQIFEQHNMREAACQFALAALEQVDEALGSGVLDESATAVKGRLWANVFKFTL
DLNYYYDAYCAIISNPDEESKTICLRRFIIVLYERGAVKILCDGQLPFIGLSEKVERELA
WKAERSDVSAKPNPFKLLYAFAMQRHNWRRAASYIYLYSAQLRIHGATQDLQRRSFILQE
RLNGLSAAINALQLVHPAYAWIDSPLEETYSNIYPSKKARITMEEQSPGNGTQSQRQRSY
LDVEKLENEFILTSAEYLLSLANVSWTFAKIEAAPTDVIDLLVESSSYDMAFTVILKFWK
GSALKRELERVFAAISLKCCPKRAPSVGNGHRMQSLLLTSSQDEIVVRGSPNVGPPSQES
KGSSHWETLELYLEKYKKFHAKLPVVVADTLLAADSQIELPLWLVQMFKGVPAKSGGGMA
GSESNPATLFRLYIDYGRYTEATNLLLEYIESFASLRPADIIRRKRPFAVWFPYSLIERL
WCQLQQSIKLGHMVDQSEKLKKLLQGSLMNHLYQLKVDSDDVMSSVS
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtcagtcgtgtttagcaggtatggaagtccccattattggcagcgattccgtc
aagtttgtgcaactctccgtcccttcttctacttctacttccgtttcttctccaactcct
cctaccgcggcaagagacgtcggttcttgctccatcattgggaaccctcccgcctatttc
acttggaaaatttgcagaagtcatccaaatgtgttggaaataatggagttctgtggtcat
aaggagttcccaaaaacaggattgcaaattgtattcccagaagcactttttccatttgca
gtgatctgcaaaaatgaaatggcattatcttctgtcaaaccatatttgcttcatgccatg
acagtgtccggggttgcctaccttattaaacttgaaaacatctccaattatgtatctagc
tcccatttgcaatctggtgattttgttgacttcaacactctgactaatcctcatcaagga
gcagcaacagcagtggcagcaatagcagaactgatggtagttggaagaagtgatggatca
gttggattcttccagcttggcatccttgaccaacaagctccaggctttgtgcaggaactg
cgtgatgattctggtcttggtcgtttgtggggcgttttgtcaaggggaaggtcaaatgct
gcagtccaggatctagtaatatcagagtttcaccagaaaaagcttctattcgtgcttcac
tctgatgggaacttacgtgtgtgggacctttcaaatcgttccagaattttcagtcattct
ttaagtgtttcaccatcagcaggatccacttttgtaaggatatgtgtgggaaacgaccac
aacaatcctgatgcaattcctatggcagtactgcaaaaaaatgattcggaagttggcaca
gcagtgatctctttatataaccttcatctcagtactggggacagaattaacttgttactg
gatccttcaacaaaaagcatctcgttggaagagggggacctcattgatataaaacttact
ccaaacaagttgtggatactcagagaaaatggattggtcatgaaggagttgtcttgtcaa
aataggaatgaggaattagcgcattgctattctttacaggatgcatttgttgctgagcag
ctgtttcaaggctctgaaaattcgtcagatgatctactttggctttctcacacagttttg
tcatcttcaaaggatcagatttctccgtttgtatcttctgttttcttacaaaggttgctc
cttccgggtgtttatcacagaaatgttcttcgggtaacattacaatattttagcaagcac
ttcactgattccgaatttgactctctgactgtggacggactgagaaatgaaattctgtca
gtcattcaacacgaggtgggagctgatagtccaatttcagtacttcagagctggaaaacc
ttttgtacctgttattttaataattggtgcaaaactaatgtagcgtgtggtttgcttatt
gattcagccacacaagctgtgggtgtaattagaaaaaactcagtctccatgtgtcgtagt
ctggaggacatagagcttcttgtttttgcctcaggatcttccggtgaacatggaaatata
atatgctctaggtttgactcctccgatagtgatcttgaacgggaaattctttttgaaata
ctgcagtgtgttaatactctccgtcaacagttgggcaaagctgctcctgccatattttat
gagtctcttcttagaacaccaagtttatcatctgaagaagtcattcctcggttgctgaaa
aatttagatagtggatatagctcatcaatggcactccatttatccgaacttggaactgat
gtagcattgaataaggaaatttcctaccacaaaagtctcagaaaattttcagtagatatg
tttttatccctgcacaacttgtgcagtagagctaccacatggaggagcgttttgcatgtt
attgaaagctatttgaaatttctcgtgcctcgaaaatatgagcataacttggattctgaa
ggactcttcacagtcagcactgcccttacagtgcaggcgacttctcaggttgctaaagtg
atgtttgaatctgcattggatgtgcatttgcttctaagctacatggttaacagtagcagt
cagattggcatgttagaggatgaggttttgaaagtaaaacttgagttggttccaatgatc
caagaggttattactgagtggcatataatcaatttcttcagtaccacaccatctgaatct
cctcttcttgaagacttcagcagtcaactttcatctttacagcttgatggaaatgttgat
cggagatcatggaatgagaaacttggtaaatctgaattcacattggcctttattctgtta
cttggaggtcgtagtgggccatcttttggacatcttcctgatcccaacagtctaagtaaa
tcagtacaagaatttgctagctggataatgtgggggagaacagaagcagaaccatctgtt
ttcttcagtcattcgataggtcttgctctggtgttgcttagacatgggcaatatgatgct
gttgagtatgtactcagtttggtggatacttattctcgcacggagaagatttgcctaagt
cttcagagcgatggtggggagtggtccactctgttgcatcttcttggttgttgctttatt
gcacaaagccaacgcggtttgcatggattaaagaaagaaaggaaaatttctgaagcagtg
cggtgcttttttagagctgcgtctgtggaaggagctgccaacgctttgcaaagtttgcca
aatgaagcaggatggctacaccttggtttctctcaacaagtctcacctgctgcttggaag
cttcattactatcaatgggcaatgcaaatatttgaacaacataacatgagggaggctgcc
tgccagtttgctcttgctgcacttgagcaagttgatgaagctcttggatctggtgttctt
gatgaatcagcaactgctgtcaagggacgtctttgggcaaatgtcttcaagttcacttta
gatctgaactattactatgatgcgtattgtgcaatcatttcaaatccagatgaggaaagc
aaaaccatttgtctaaggcgatttataattgttctatatgagcgaggagctgtgaagatt
ctttgtgatggccagctaccatttattggcttgtctgagaaagtggagcgagagcttgct
tggaaggctgagcgttcagatgtttcagccaagccaaacccgttcaagttgctctatgca
tttgctatgcagagacataattggcggagagcagcgagctatatttacttgtattcagca
caattaagaatccatggtgcaacgcaagatctccaacgacgatcctttattctgcaggag
aggctgaatgggctttctgctgctatcaatgctctacagctggttcatcctgcatatgct
tggattgattctccacttgaggaaacttactccaatatatatccaagtaaaaaggctagg
ataaccatggaagaacagtctcctggtaatggtactcagtctcagaggcaaaggtcatat
ttagatgttgaaaaacttgagaatgagttcattctaacgtcagctgagtatttgctgtca
ttggcaaatgtctcttggacctttgctaaaattgaggcagccccaactgatgtgattgac
cttttggttgaatcaagctcgtatgatatggcttttacagtaattctgaaattttggaaa
gggtcagctttgaagagggaacttgaaagagtttttgcagctatatcattgaaatgctgc
ccaaagagagctccatctgttgggaatggtcacaggatgcagagtcttcttttgacttca
tcacaggatgagattgttgtccgtggatcgcctaatgttggtccaccttcacaggaatct
aaaggcagtagccattgggagacacttgagctctatctcgaaaaatacaaaaagtttcat
gctaaattgcctgttgttgttgctgatactcttcttgctgctgattctcaaattgagttg
cctctttggttggttcaaatgttcaagggtgtgccagcaaaaagtggtgggggaatggca
ggaagtgagtcaaaccctgctactttgtttcggctatatattgactatggtcgttatact
gaagcgactaatctgcttctggagtacattgaatccttcgcgtcactgagaccagctgat
attattcgtcgtaagaggccatttgcagtttggtttccctattctttgattgaacgttta
tggtgtcaacttcaacaatctatcaaactaggccacatggttgatcaaagtgaaaagctg
aagaagttgttacagggctctctcatgaaccatctatatcaacttaaagtggattcagat
gatgtgatgtcttctgtttcctag
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integrated database retrieval system
