Solanum lycopersicum (tomato): 101253129
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Entry
101253129 CDS
T02665
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101253129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101253129
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
101253129
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
101253129
NCBI-ProteinID:
XP_004229815
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All DBs
Position
1:complement(84867498..84873808)
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AA seq
709 aa
AA seq
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MARNKEALVLVIDVGPSMHSVLPEIEKVCSLLIQKKLVFSRYDEVGFVLFGTADTKNELK
EEIGGYEHVTVLRNIKVVDEDLVDALQKLPRGSVPGDFLDAIVVGTDMLIKFGRTNKAKR
RLCLITNAVSRIKDPFEGTKEDQVNTIATQMTAQGIKMDCVIVRMKQDRETNRSIMEEND
FLMSVFSNKSSSKVVYVESPTSLLGALRTRNISPVTIYRGDLEISAQLKIKVWVYKKTSE
EKFPTLKKYSERTPTTDKFGAHDIKVEYENKIIEDPNKVVPPEQRIKGFQYGPQVVPISS
AELEAVKFKPEKSVKLLGFTDSSNIMRHYYLKDVNIFIAEPGNKNAILALSALARAMKEM
NKVAIVRCVWRQGQGNVVVGVLTPNVSDKDNTPDSFYFNILPFAEDVRDFQFPSFSNLPS
SMQPNEKQQDAADKLVQMLDLAPPGKQEVLSPDFTPNPVLERYYRYLNLKSKHPDAAVPP
LDETLRKITEPDVELLSQNKSIIEELRRSFELKDNPKLKKSARRIKERPSGSDEEIEEFN
KDADVKAIDSMEYSAKTEVEKVGDVNPVKDFEDMLSRRDNPKWISKAIQDMKNRIFDLVE
NSCDGDTFHKALQCLVALRKGCILEQEPKQFNDFLCHLSKFCQEKDLRSFCLYLTSHEIT
LITKAEAPDSEISEHEARSFMVKPELDSQNMKSEAKAEDDIMSIYLGGK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtaataaggaagcgttggtattggtaattgatgtgggtccttccatgcactcg
gttttacctgagattgaaaaagtttgctcattgttgatacagaagaagctggttttcagc
agatatgatgaagtggggtttgtcttgtttggaactgcagacaccaagaatgaattgaaa
gaggaaataggaggatatgaacacgtgacagttctgcgaaatatcaaagttgtagatgaa
gatcttgttgatgctctgcaaaaacttccacgaggaagtgttcctggagattttcttgat
gcgattgttgttggtacggacatgctcattaagtttggacgaaccaacaaggcaaagaga
cgtctttgccttattacaaatgctgtttctcgcatcaaagatccatttgaaggaacaaag
gaagatcaagtaaacaccattgctacccagatgacagcacaaggcattaagatggactgt
gtaattgtcagaatgaaacaagatcgggaaacaaataggagcattatggaagaaaatgat
tttttaatgtcagtattctcgaacaaatcttcctcaaaagtagtatatgtggaaagtcca
acttctttattaggtgcacttagaactcgtaatatatcgccagtcacgatatacagaggt
gatcttgaaattagtgcacaattgaagatcaaggtgtgggtttacaagaaaacatctgaa
gagaagtttcctaccctgaaaaagtactccgaaaggactcctaccactgataaatttggt
gctcatgacatcaaggttgaatacgaaaataaaatcatagaagaccctaataaagttgtg
ccaccagaacagaggattaaaggttttcagtatggacctcaagtagttcctatatcctct
gctgagttggaggctgtaaagttcaaaccggagaaaagtgtgaagctactaggattcaca
gattcttcaaacataatgcggcattactacctgaaagatgtaaatatcttcatagccgaa
cctggcaacaaaaatgccatccttgcactttctgctttggcaagggcaatgaaggaaatg
aacaaagtagcaatcgtccgatgtgtatggaggcaaggccaaggtaatgttgttgttggg
gtccttacaccaaatgtctctgacaaggataatactcctgattcattttacttcaatatt
cttccctttgctgaggatgttcgggatttccagtttccttctttcagcaatttaccttca
tcaatgcagccaaatgaaaagcaacaagacgcagcagataaattggttcagatgttggat
cttgcaccacctggaaaacaggaagtgttatcacctgacttcacacctaatcctgttcta
gagcgttactaccgctatcttaacctgaagtcaaagcacccagatgcagctgttcctcca
cttgatgaaaccctcagaaagataacagaacctgatgttgaacttctttctcaaaacaag
tccatcatagaggaactccgtaggtcttttgaactaaaagataatccaaagctgaaaaaa
tcagcaagaagaataaaagagagaccttcaggatcagatgaggagatagaagaattcaac
aaagatgctgatgtcaaagctatagactccatggaatactcagccaaaacagaagttgag
aaagttggagatgttaatcctgtcaaagactttgaggatatgctgtctcgaagagataat
ccaaaatggattagtaaggccattcaggatatgaaaaataggatctttgatctcgtcgaa
aattcttgtgacggagatacatttcataaagcattgcaatgtttggtggctctacgcaaa
ggttgcatccttgagcaggaaccaaagcagttcaatgatttcctgtgccacctatctaaa
ttttgccaagaaaaagacctgagaagtttctgtctatatctcacatctcatgaaatcact
ttgataaccaaggcagaagctccagacagtgaaatttcagaacatgaggctagaagcttt
atggtcaagcctgaacttgactcgcaaaatatgaaatcagaggctaaagcagaggatgat
attatgagtatatacctgggagggaagtag
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