Solanum lycopersicum (tomato): 101253177
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Entry
101253177 CDS
T02665
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101253177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101253177
Spliceosome [BR:
sly03041
]
Complex B
Other components
Prp19-related factors
101253177
Complex C
101253177
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_10
zf-CCCH_12
RRM_occluded
zf-CCCH_3
RRM_YTH1
zf-CCCH
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
101253177
NCBI-ProteinID:
XP_010319135
UniProt:
A0A3Q7GSY6
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All DBs
Position
4:8436880..8442232
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AA seq
479 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGVDARIS
EQDLRDQFYAHGEIESIKMVLQRSCAFVTYTTREGAVKAAEELANKLVIKGLRLKLLWGR
PQAPKPDTELSDEARQQAAVTHSGLLPRAVISQQNQLPPPPGTQEQPPQPMPYFNIPPML
QQERAYYPSMDPQRMGAVVSSQDGASSSAAGSGPENKIGSEKHPQGQHYAYPPAPPPQGQ
FYPPYYPPPPYGYMPPPPPPHYQQYPPPYQGARPPPPPPTGEQAAFQQKPQPAGAAAQP
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgcttagagatgcagaagctgatggatgggagcgatctgattttccg
attatatgtgagtcttgtctcggggatagtccctatgtgcgaatgacgaaagcagattat
gataaggagtgcaagatatgcacacgacccttcacagtgttccgatggagacctggtcgg
gatgcaagatacaaaaaatctgagatctgtcagacctgcagcaagttgaagaatgtttgt
caagtttgtcttttggatctcgagtatggtttgccagttcaggtccgagacactgctctc
agtatcaattctaatgatgcaattcccaagagtgacgttaatagagaatattttgcagag
gagcatgaccgcagggcaagagcagggattgattatgaatcttcatatggaaaagtccgt
gcgaatgacactattttgaagctccaaagaactactccatactacaagagaaatcgggca
catgtttgcagtttctatatacgtggtcaatgcactagaggtttggagtgcccttatagg
cacgaaatgccggagactggggagttgtcacagcaaaacattaaggaccgttactatgga
gttaatgatcctgtggcgatgaagctacttaataaagcaggtgaaatgccttcattggag
ccccctgatgacgagagcattagaaccctctatgtgggtggtgttgatgcaagaatcagt
gagcaggacctaagggaccagttttacgcacatggagaaatcgagtcgattaaaatggtg
ttgcagcgtagttgtgcttttgtaacctacactacaagagaaggtgcagtgaaggcagct
gaggaactagcaaacaagctagtgataaagggcttgagactgaagctgctctgggggaga
ccacaagctcctaaaccagacaccgaactgtctgatgaagcacgtcagcaggctgcagtg
actcacagtggattgttgcccagagctgtcatatcacaacagaaccagcttcctccaccc
ccaggcactcaggaacaaccgccacaaccaatgccatacttcaacattccaccaatgctt
cagcaggaaagagcatattatccatcaatggatccccaaaggatgggtgccgtagtttca
tctcaggatggggcttctagttcagctgcagggtcagggcctgaaaacaagattggttct
gagaaacacccacaaggacaacactatgcatatccacccgcgcctccacctcaaggtcaa
ttttacccgccttactatccaccaccaccctatgggtatatgccaccaccaccacctcca
cattatcagcagtatcccccgccatatcaaggtgccagaccacctcccccacctcctacc
ggtgagcaagctgcttttcagcagaaacctcaaccagcaggagctgcagcacaaccttaa
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