Solanum lycopersicum (tomato): 101253276
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Entry
101253276 CDS
T02665
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101253276
03015 mRNA surveillance pathway
101253276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101253276
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101253276
mRNA cycle factors
P-body specific factors
101253276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
101253276
NCBI-ProteinID:
XP_010319848
LinkDB
All DBs
Position
4:44314972..44344832
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AA seq
1198 aa
AA seq
DB search
MEHPEDDCRVGVEHPEKHEDEEAVARHEEFKKSVEAKIALRQNNLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRSVNLSKFVSEAVTAICDAKLRAADIQAAVLIC
SLLHQRYKDFSPSLVQGLVKIFFPGKAAEDVDVDRNARAMKKRSTLKLLLELYFVGVVDD
TGIFVNIVKDLTSVEHLKDRDATQTNLSLLASFARQGRYLLGLQLAGQDILEELFKALNV
TTDQKRFFRKVFQTYYDASVELLQSEHASLRQMEHENEKILSAKGELNEENASAYEKLRK
AYDQLYRGISGLAEALDLQPPVMPEDGHTTRVTSGEDASSPGGSKDSSSLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKLSEQLAKVQDHSIDSTPDADETQTAAQEIADAVAVQ
EDRNDIGKDKDEKDKEKTKEKSKEKDKDEKDKEPDKEKTREKEAERKGEGDKEKAKGVEG
TNLDSLLQRLPGCVSRDLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMV
ATLSTCMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPPGLVFS
CLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHIT
LVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSLEHVLRQLRKLPWSECEAY
LLKCFMKVHRGKYGQIHLIASLTACLSRYHDDFSVAVVDEVLEEIRVGLELNDYGMQQRR
IAHMRFLGELYNYELVDSSVIFDTLYLILVFGHGTSEQDVLDPPEDCFRIRMVITLLETC
GHYFDRGSSKRKLDRFLIHFQRYILNKGVLPLDIEFDLQDLFAELRPNMTRYASIEEVNA
ALVDLEEHERIVTSEKANNEKHSETEKIPSRTTSGMSVNGQSLSNGIEENGLHEEVVETE
SDSENGTIEHVAHDDDEETDDWNRDDRCDTEDESDEGDGPGSDEEDKVHVRSKVAEVDPL
EEAEFERELRALMQESLDSRKLELRGRPTLNMTIPMNVFEGPTKDHRGVEGESGDETLDE
ATGGSKEVPVKVLVKRGNKQQTKKMLIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYND
REEEELNGLGNQPSSWTQSSGSRVAHRGSTWDAPGRGSGSRHRYLHHSGGGLYYGRRR
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggaacatcctgaggatgactgtcgtgttggagtggaacacccagagaaacatgaagat
gaggaagctgtggctcgtcatgaggaattcaaaaaatctgttgaggcaaagatagctctt
aggcagaataatctgaatccagaacgaccagacactggttttctaaggacattggattct
agtattaagcgcaatactgcagttattaaaaaactaaaacagattaatgaagagcagcga
gaaggtttgatggaagagttgcgcagtgtcaacttaagcaagtttgtaagtgaagcagtg
actgctatttgtgatgcaaagcttcgggctgcagacatacaagctgcagtgctgatctgt
tctttgcttcatcagcggtacaaggacttttcaccaagtctagttcaaggtcttgtgaaa
atcttctttcctggaaaagctgcagaggatgtagatgtggacagaaatgcgagggctatg
aaaaagcgtagcactttaaaacttctattggaactttactttgttggagttgttgacgat
actggcatctttgtgaacattgttaaggacctcacgagtgttgagcatttgaaggaccga
gatgcaactcagactaatttgtcacttcttgctagctttgctcgacaaggaagatacctg
cttgggcttcaattggctggccaagatattcttgaggagcttttcaaggccctcaatgtg
actactgatcagaaaaggttctttaggaaggtgttccaaacatattatgatgcgtcggta
gaacttcttcaatctgagcatgcttcacttcggcaaatggagcatgaaaatgaaaagatt
ttatctgccaaaggtgaactgaatgaagagaatgcttctgcatatgagaaactgcggaaa
gcttatgaccagctgtatcgtggcatctcaggattggcagaagcacttgacttgcaacct
ccggtgatgcccgaggatggtcatacaaccagggtaacatcgggggaagatgcatcatcc
cctggtggtagtaaagattcttcttccctagaagccctgtgggatgatgaagatacaagg
gctttctatgaatgtctaccagatctcagagcatttgttccagcagtattgcttggagaa
gcagaaccaaagttgagtgaacaacttgcgaaagtgcaagatcattcaattgattcaaca
cccgatgcagatgaaactcagactgctgcacaagagattgctgatgctgtagctgtacag
gaggacagaaatgatataggcaaggataaagatgagaaggataaagagaagaccaaggaa
aaatcaaaagaaaaggataaagatgaaaaggataaagagcctgataaggaaaaaacaaga
gaaaaggaagctgaaagaaaaggagaaggtgataaggagaaagcaaaaggtgttgaagga
actaatttggatagtctgcttcagcggctacctggttgtgttagccgtgatttgattgac
cagttgactgtggagttttgctatttgaattccaagtccagtaggaaaaaacttgttagg
gcattgttcaatgtccccaggacatcactagagttgttgccatactactctcgcatggtt
gccactctgtcaacttgcatgaaggatgtgtcttctatgcttttacagttgttggaagag
gagttcaactttttgataaataagaaggatcaaatgaatatagaaacaaaaataaggaat
attcgttttattggagagctctgcaaatttcgaattgctccacctggccttgttttcagt
tgtctgaaggcttgtttagatgatttcagtcatcacaatattgatgttgcttgcaatctt
ctcgagacatgtgggcgttttctctaccgatctcctgaaactacaatacgcatggcaaac
atgttagaaatattgatgcgtctgaagaatgttaaaaatttggatcctcgccacatcacc
ttagtggagaatgcatattacttatgcaagccaccagaaagatctgcacgagtgtctaaa
gttcggcctcctctgcatcagtacattagaaaattgctgttttcggatcttgacaagtct
tcattagagcatgtgctcagacagcttcgtaagcttccttggagtgaatgtgaggcatac
cttttgaagtgtttcatgaaggttcacaggggcaagtatggtcagattcatttgattgcg
tcacttactgcttgtttaagccgctatcatgatgatttttctgttgcggttgttgatgag
gttctggaggagatcagggtgggattagagttgaatgactatgggatgcagcaaagacgt
attgctcacatgcgtttcctaggggagttgtataactatgaacttgttgattcctctgtg
atatttgatacactctatttgattctcgtttttggccatggaacgtcagagcaagatgta
ttggatcctcctgaagattgtttccgcatcaggatggttattacgctacttgaaacctgt
gggcactactttgatcgaggttcatcaaagcgaaaacttgatcggttcctaatacatttc
cagagatacatactgaacaaaggtgtactccccctggatatagagtttgacttacaggac
ttatttgctgaattacgtcctaacatgacgagatatgcatcaattgaagaagtcaatgct
gctttagttgaccttgaggaacatgagcgcatagttacatctgaaaaagccaacaatgag
aagcactctgagaccgagaaaattcccagcagaactacctctggaatgtctgtaaatggg
caaagcctttcaaatggcattgaggaaaatggattgcatgaagaggttgtggagactgaa
agtgattcagagaatggcaccattgagcatgtggctcatgatgatgatgaagagacagac
gattggaatcgggatgataggtgtgacactgaggatgaatctgatgagggcgatggacct
ggttctgatgaggaagataaagtacatgtcagatcaaaggttgcagaggttgatcctctg
gaggaagcagaatttgagagagagcttcgggctctgatgcaggaaagtttggattcaaga
aaattggaattacggggaagacctacgctaaacatgacaataccaatgaatgtctttgag
ggcccgaccaaggaccatcgcggggttgagggagagagtggtgatgagacattggatgaa
gcgactggaggaagtaaagaggttccagtgaaggttctcgtgaagcgaggtaataagcaa
cagacaaagaaaatgctcattcctcgtgattgctccctcattcagagcacaaaacagaaa
gaagcagctgaacttgaagaaaagcaagacatcaagaggctggttctggagtacaatgat
agagaggaggaagagctaaatgggttagggaaccagccatcaagctggactcaaagcagt
gggagtagggttgctcataggggcagcacatgggatgcacctggtaggggtagtggctcg
cgtcatcgctatctgcatcattcaggtggtggcctttattatggcaggagaagatga
DBGET
integrated database retrieval system
