Solanum lycopersicum (tomato): 101253638
Help
Entry
101253638 CDS
T02665
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101253638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101253638
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101253638
Spliceosome [BR:
sly03041
]
Complex C
Other components
Step II factors
101253638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_30
nSTAND3
Flavi_DEAD
AAA_24
AAA_16
T2SSE
ResIII
Sigma54_activ_2
TMEM247
AAA_7
ABC_tran
ATPase
Motif
Other DBs
NCBI-GeneID:
101253638
NCBI-ProteinID:
XP_004249090
UniProt:
A0A3Q7JEB3
LinkDB
All DBs
Position
10:complement(58941585..58953181)
Genome browser
AA seq
1285 aa
AA seq
DB search
MQKGDAGPIDLDKTTTTLEPDKTSSGGLFVPGKERVVFKPSERKSLLGLDALAIAKRGGA
TVESEFKVPRERLASIASSLDEDEESSAVSGIDELGHTASNVSRNNVRRRYRESYASETS
ASGSAVTDERGDAETVVRSHLNENTEVPPVSSGSLRSTISRGESVDRERDGSEYRDNYRS
ESREGRRRDRRTSREERHHRDSSRGYEREYDGDDGRKRSRYDGFRRTPGRSEWDDGRWEW
QDTPRRDSRSSSSSRRYEPSPSPKFLGASPDSRLVSPWLGDHTPQSAGAASPWDSVAPSP
TPIRASGSSVRSSSSRYGAKSSLIMSSTGGALSEDGGDDTNGASEDQNEEITESMRLEME
YNSDRAWYDREEGSTVFEGDGSSAFLGDEASFQKKEVELAKKLVRRDGSKMSLAQSKRLS
QLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRIVFTKQAE
PIMPIKDPTSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQV
DADTATVGEDGEVDFKGEARFSQHLKKGEAVSDFALSKTLSQQRQYLPIFSVRDDLLQVV
RENQVVVVVGETGSGKTTQLTQYLHEDGYTSNGIVGCTQPRRVAAMSVAKRVSEEMETEL
GDKVGYAIRFEDVTGPTTVIKYMTDGVLLRETLKDPDLEKYRVIVMDEAHERSLNTDVLF
GILKKVVARRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNKLYSKTPCEDYVE
AAVKQAMTIHITSAPGDILIFMTGQDEIEATCYALSERMEQLTSSTKQAVPNLLILPIYS
QLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVYNPRMGMDAL
QVFPISRAAADQRAGRAGRTGPGTCYRLYTENAYENEMLQSPVPEIQRTNLGNVVLLLKS
LKIQNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGDLTSLGWKMVEFPLDPPLAKMLL
MGEQLECLNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKA
NQYRGDWCNDHYLQVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHN
AARLKGVGEYVNCRNGMPCHLHPTSALYGLGYTPDNVVYHELILTSKEYMQCVTAVEPHW
LAELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEEMEKLRKVQAEADRRNKEKEKEKRAK
ELQQVSMPGLKKGSTTYLRPKRLGL
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaggagatgctggaccaattgatctggacaagacaacaacgacattggaacct
gataagacgagcagtgggggtctttttgttcctgggaaggagagagtagtttttaaacct
tctgagcggaaatcacttctagggcttgatgcattggcgattgctaaaaggggaggggct
actgtagagagtgaatttaaagttccaagggagagacttgcttcaattgcgtcatcttta
gatgaggatgaagagtcatctgctgtttctggaattgatgagttgggacatactgcatct
aatgtttcacggaataatgtacggaggaggtatcgtgaatcttatgctagtgagacatct
gcttcaggtagtgcagtaaccgatgaacggggagatgctgagacagtcgtgaggtctcac
ttgaatgagaacacagaggttccacctgtatcttctgggagtttacgttctacgatatct
aggggcgagtcagttgaccgtgaaagagatggaagtgaatacagggataattacagaagt
gaaagcagggaagggagaaggagagatagaagaaccagcagggaagagcgccaccatagg
gattcatcacgtggttatgaaagagaatatgatggggatgacggaagaaaaagaagtaga
tatgatggtttcaggaggactcctggaagatcggaatgggatgatggtagatgggagtgg
caagatacccctcgtcgtgatagtcgttccagtagtagtagcaggcgttatgagccttca
ccatcaccaaagtttcttggagcttcacctgattctcgacttgtttcaccatggctcggg
gatcatactcctcaatctgctggagctgcttctccgtgggacagtgtggctccttctcca
actccaattagggcatctgggtcatcagtaagatcttcaagttccagatatggtgctaaa
tccagtttgattatgtcttctacaggaggtgctctgtctgaggacggaggagatgataca
aatggtgcctctgaagatcagaatgaagagattactgaaagtatgcgtttagagatggag
tataattcagatcgtgcctggtatgaccgcgaagaaggtagtacagtgtttgaaggggat
ggttcatcagcatttctaggtgatgaggcatctttccagaagaaagaggtggaattggcc
aaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatca
cagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgtt
agaggtaccgaggtgcagacggagtttgatgatgaggatgaacggaaggttattcttctt
gttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgag
ccgataatgccaataaaggacccaacttcagatatggccataatttcacgtaaaggctca
gctctagttcgggaaatacgtgaaaaacaaaacatgcacaagtctcgacaaagattttgg
gagctggctggttcaaaactcggagatatccttggtgttgagaagagtgcagagcaggtt
gatgcggatactgctacagtgggcgaggatggagaggttgattttaaaggagaagctaga
ttctcacagcacttaaagaaaggggaagctgtcagtgattttgcattatcaaaaacactt
tcacagcaaaggcagtatctgcccatcttctctgtgcgagatgatttattgcaggtggtt
cgcgaaaaccaggtggtggtggttgttggagaaactggttctggaaagacaacacagcta
actcagtaccttcatgaagatggctatacaagtaacgggattgttggttgcacccaaccc
aggcgtgtggcagccatgagtgttgcaaaaagagtcagtgaagaaatggaaaccgagctt
ggtgataaagttggatatgccattcgttttgaagatgtcactgggccaacaactgttatc
aagtacatgactgatggtgttcttctaagggaaacactcaaagatcctgatcttgaaaaa
tatcgtgtaattgtaatggatgaggcccatgagagatcactcaacactgatgtccttttt
ggcattcttaagaaagttgtggctaggcgacgtgattttaagcttattgtcacttctgca
actctgaatgcccagaagttctctaacttttttgggagcgtaccaatatttcacatacct
ggaagaacctttccagtaaataaattgtatagtaaaaccccatgtgaagattatgtcgaa
gctgcagttaagcaagccatgaccatccatattactagtgcaccgggtgatatactcatc
ttcatgactggtcaggatgagattgaagctacctgttatgcactttcagagcgcatggaa
cagcttacctcgtcaacaaagcaagcagtgcccaatctattgattcttcctatatactct
caactgcccgctgatttgcaagcaaaaatattccagaaagctgaagacggggctcgaaaa
tgcatagttgctactaatattgcagaaacatccttgactgtcgatggaatttactacgtc
attgatacaggctatggtaaaatgaaggtgtacaatcctcgtatgggtatggatgctctg
caagtgttccctattagtcgagctgcagctgaccagcgtgctggtcgagctggtagaact
ggcccaggaacttgttaccggctttatactgagaatgcgtatgagaatgaaatgctgcaa
agtcccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtct
ctcaaaattcagaacctgttggattttgattttatggacccacctcctcaggataacatc
cttaactccatgtatcagttgtgggtattaggtgcacttaacaatgttggggatttaaca
agccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttg
atgggagaacaactagaatgtttaaatgaggttctgactattgtttctatgctttcagtg
ccttctgttttctttagacccaaggatagggctgaggaaagtgatgctgctagggaaaag
ttttttgtgccagaatctgatcaccttacactgcttaatgtttaccagcaatggaaagct
aatcaatacagaggggactggtgtaatgaccactatttacaggtcaaaggtttacgcaag
gctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcact
tcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataat
gcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccac
cttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcat
gagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactgg
ttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaa
cataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgt
aaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaa
gaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgaccc
aagaggctcggtctgtaa
DBGET
integrated database retrieval system
