Solanum lycopersicum (tomato): 101253869
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Entry
101253869 CDS
T02665
Name
(RefSeq) SAC3 family protein B isoform X2
KO
K23719
nuclear mRNA export protein SAC3
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101253869
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
101253869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAC3_GANP
TRAP_alpha
Motif
Other DBs
NCBI-GeneID:
101253869
NCBI-ProteinID:
XP_004252222
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All DBs
Position
12:45237487..45258011
Genome browser
AA seq
1565 aa
AA seq
DB search
MAFQGFGKNTGPIAPPKAQTPFGNSRTPSTSDTLPKWGNGHKYIYHDYDAQAHQQSPQLV
PSLPENALSTSVRGSQLQDLRTTGPHTSFSSDAEIPGASMTMRGSRSDLISSDQCPFVSQ
QNQSSPLFQNESPLVPKSTRSPPLAFHNNLHTEANIPPLGGAQRPSLPPHMRGNSTQSFQ
NLPIRLPHQRLPSIPTNYDPGRQIAVKHADQVSKRTRSPPHSPPNVASFEKSALGLRESK
RPSTSPSKLRSNAPPDSLAPQSSMSGYGVNVGVDLSKPMNFPVSKRTKFPSVPSSDQVLQ
YDSNHSDEDIQRETEAKAKRLARFKDDLSRQNARDDSSIPQKGPSTRMSQYQSVVDRPKF
SAEDIVDSSDDFSDGNLLSDYQGSESSGVIIGSCPDMCPESERAERERKGDLDQYERLDG
DRNQTSKLLAVKKYTRTAEREAVLIRPMPILQKTMDYLLNLLEQPYGESFLRLYNFLWDR
MRAIRMDLRMQHIFNREAINMLEQMIRLHILAMHELCEYTRGEGFSEGFDAHLNIEQMNK
TSVELFQLYDDHRKRGINVETEREFRGYYALLKLDKHPGYKVDPAELSLDLAKMAPDMRQ
TPEVLFARDVARACRTGNFIAFFRLARRASYLQACLMHAHFSKLRTQALASLHSGLQNSQ
GIPVNQVSKWLGMEDEDIEGLLEYYGFSLKEFEEPYMVKEGPFMEVDNDYPVKCSKLVHK
KKSRTIFEDVSVPHVVSVTEKKRETLLDKDHQQKPSAFQFLKPDHSSLPIEENMHDYETV
SSRKDEIEAIPITKTEFYQETKYGSQQDPPSRAVSSLLAPPLVFFPHMSPEVQQQARVRS
AEKPEVQLQARVGSSGTPKNDEVAQFDARSMPIQFIPARDEWDSSPVLPASSLVEDTELK
HMSDEENEDEELVITSEEAETNEPAASYYDEEVAEAKLKLIIRKWKRRSLKKREMREEKQ
LASKAALSSLSLGVPMWPNRIQHSTTVEFNIDHAVSKWYRTLEKSWSRLNVSDVVATTLY
EKNAAARCLCWKVIICCEDNNINNLNPKNGVDQLNAKSWLLSKLMPAREDEDDTLITSPG
LSVWRNWILNESGGDLICCLSVIKYSNFENLNETVAGASAVLFLLSEGIPWVLQKNQLHR
LLMSVPSGSQLPLLIVSELCKENADPSTIVKELELHEVHESRLHSFSVVYLKNQQMEQLN
GFFSDEQLRGGLKWLASESPPQPVIQCVKVRELVLYHLNSLLGVLGEMNVCDVGPDNCIS
AFNKALDQSMREIAAAAHANPTCWPCPEIGLLEEHSHEHEAVTQHLPQTGWSLAPRIEPV
VRAISDCKFPSFLDDTSWLHRGSDVDLKSQILQLQSCLTKYFTEISKLMVLPLAEKEASV
MMQKFVQLQLQNSYYYIVPNWVMIFQRAFNWQLMKLAKETSFSVYILIKHDLSTSMLGAV
ELEASAQPHYHLSHPSLDEMVEAGRMPLLGCAMLDGEGRAFQPYPGMTSDSEEIPTTTGA
CNEIEDGKDVEYVKASYNGMEDLNEGESEPLMTIKEMKETDKLGELLDRCKIKQNMIDEN
LSIYF
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttcagggtttcgggaagaatacaggccccattgcccctcctaaagcgcaaacc
ccttttgggaattctcgcactccttctaccagtgacactcttcctaaatggggtaatgga
cacaaatacatctaccatgattatgatgcccaagcccaccaacagtctccccaactagtg
ccatctttacctgaaaatgccctctctactagtgttagaggttcccaacttcaagatttg
agaacaacagggccacatacttcattttcttctgatgcagagattccgggagcctctatg
accatgaggggaagtcgttcagatttgatatcaagtgatcagtgcccctttgtctcccaa
caaaatcaatcatctccattgtttcaaaatgagagtccattggttcccaagagtacaagg
tcacctccattggcttttcataacaatcttcacacagaggccaatattcctcctcttggt
ggagctcaacggccttcgctccctcctcatatgcggggaaactcaacccaatcgtttcaa
aaccttccgatccgtttacctcaccaaaggctgccctcgattccaacaaattatgaccct
ggaagacagatcgcagtgaagcatgcagatcaagtctcaaaaagaacaaggtccccccct
cattcacctcctaacgtggcttcttttgagaaatcagctcttggtctacgtgaatccaaa
aggccgtctacctctccttccaaattgaggtcaaatgccccccccgactctctagctcct
caatcctcaatgtctggatatggtgtcaatgttggagttgatctgagtaagccaatgaac
ttcccagtatccaaaaggaccaagtttccttccgtaccttcatctgatcaagttcttcaa
tatgactccaatcattctgatgaagatattcaacgagaaactgaggccaaggcaaagcgc
ttagctcgttttaaggatgatctcagccgacaaaatgcacgagatgattctagtattcct
cagaagggtccttcaacgagaatgagtcagtatcaatctgttgtggacagaccaaaattt
tctgcggaagatattgtagattcaagtgatgatttctcagatggcaatctgctatctgat
tatcaagggtcggagtcttctggtgtcataattggttcatgtcctgatatgtgtccagaa
tcagaaagagcagaacgagaaaggaaaggagaccttgaccaatatgaacgtttggatgga
gacagaaaccaaaccagtaaattgcttgctgtcaaaaagtacaccaggacagctgagagg
gaagcggtgctcatacgtccaatgccaattttacagaagaccatggattatcttttgaat
ttgctagagcagccttacggagaaagctttcttcgcctgtataacttcttatgggacagg
atgcgtgcaatccgtatggatttgaggatgcaacatattttcaaccgtgaagctattaat
atgctggagcaaatgataaggctccatatactcgccatgcatgaattgtgtgaatacacg
agaggagaggggttttctgagggatttgatgcacatctcaatattgaacagatgaataaa
acatcagttgaactatttcaattgtatgacgaccaccggaagagaggaataaatgtggaa
acagagagagaatttagaggttattatgcacttttaaagcttgataaacatccaggctat
aaagttgatcctgcagagctttcacttgatttagcaaagatggcaccagatatgcggcaa
acaccagaagttctctttgcccgtgatgtggcgagggcctgcaggaccggtaattttatt
gctttctttcggcttgcaagaagagcaagctatcttcaagcttgcttaatgcatgctcat
ttctcgaagttacgaacccaggccctggcttctttacactctggactgcagaatagccaa
ggaatccctgttaaccaagtttcaaaatggcttgggatggaggatgaggacatagaaggc
cttcttgagtattatggtttctcattaaaggagtttgaagaaccatatatggtgaaggaa
ggcccgtttatggaagtagacaatgactatcctgtcaagtgctcaaaactcgtccataag
aaaaaatcaaggacaatatttgaggatgtttcggttccgcatgttgtgtcagtgacggag
aaaaaaagagagaccctgttagataaggatcatcagcaaaaaccttcagcttttcaattt
ctcaagcctgatcattcttcactgcccatcgaggagaacatgcatgattatgaaactgtt
tcatctcgaaaagatgagatagaggcgattccaattactaaaacagaattttatcaggag
acgaaatatggaagtcagcaggatcctcctagtcgtgcggtgtcaagtctgctggctcct
cctttggtattctttcctcatatgtcccctgaggttcagcaacaagctagagttcggagt
gcagaaaaacctgaagtacagctgcaagcaagagttgggagttcagggacacctaaaaat
gatgaagttgcacaatttgatgcaagaagtatgcccattcaatttattcctgccagagat
gagtgggatagttctccagttttgccagctagttctcttgtagaagacacagaattgaaa
cacatgagtgatgaagagaatgaagatgaagaactggtgatcaccagcgaggaagctgaa
actaatgaaccagctgcaagttattatgatgaagaagttgctgaggcaaaacttaaactg
attatcaggaaatggaagcgacgttctttaaagaaaagggagatgcgagaggagaaacag
ttagcatctaaagctgctctgagttctctctctcttggagttccaatgtggcccaacaga
attcaacatagcacaacagtcgagttcaacattgatcatgctgtctcaaaatggtaccga
actctggaaaaatcatggtcaaggctgaatgtttcagatgtagttgccaccacattatat
gaaaaaaatgcagctgccagatgcctttgctggaaagtaataatatgttgtgaggataat
aatataaacaatctgaacccaaaaaatggcgtggaccagttgaatgccaagtcctggttg
ctttccaagctcatgcctgcaagagaagatgaagatgatacactaattacgtctccaggc
ctgtctgtttggaggaattggattcttaatgaatcaggcggggaccttatttgttgttta
tcagttatcaagtacagtaattttgagaatctgaatgagactgtagcaggtgcaagtgca
gttctctttctgttgtcagaaggtatcccatgggttcttcagaaaaatcagcttcataga
ctgttaatgtctgtaccttctggttctcagttaccccttttgattgtaagtgagctgtgc
aaagaaaatgcagatccttccactatagttaaagaactggagctacatgaagtccatgaa
tcaagacttcattcctttagtgttgtttacctaaaaaaccagcagatggaacagttgaat
gggtttttcagcgatgaacaattaagaggaggactgaagtggctggcaagtgaatcacca
ccacaaccagttatccagtgtgtaaaagtcagagaactggttctctaccatttgaattct
ttgcttggggttcttggtgaaatgaatgtttgtgatgttggtccagacaattgtatctca
gcctttaacaaggccttggatcagtctatgagggaaatagctgctgcagctcatgctaat
cctacctgttggccctgtccggaaataggtttgctggaggaacatagccatgagcatgaa
gctgtgacccaacacttgccacagacgggatggagcttagctccaagaattgaaccagtt
gtgcgtgcaatatctgactgcaaatttccatcttttctagatgatacatcttggttacat
agaggttctgatgtggatttaaaaagccagatattacaacttcaaagttgtctaacaaag
tacttcacagagattagcaagttgatggtactgccacttgcagaaaaagaggcaagtgtt
atgatgcagaagtttgtgcagcttcaactccagaactcatactactacattgttccaaac
tgggttatgattttccaacgggcattcaattggcagttgatgaaattagctaaggagaca
tctttctcagtgtatatcctgataaagcatgatttgtccacttcaatgcttggagctgtg
gaactcgaagcctctgcacagccgcattaccatttgtcacatccatctcttgatgaaatg
gttgaagctgggcggatgcctcttctcggatgtgctatgcttgatggggaaggaagagct
ttccaaccttatccaggtatgacttcagacagtgaagaaattcccacaacaactggcgca
tgcaatgagatagaggatggaaaggatgttgaatatgtaaaagccagttataatggaatg
gaagatctaaatgaaggtgaaagtgaacctctgatgaccataaaggaaatgaaagaaact
gacaaacttggcgaattactggacagatgtaagattaagcagaatatgatagatgaaaac
ttgtcaatatatttttaa
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integrated database retrieval system
