Solanum lycopersicum (tomato): 101253937
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Entry
101253937 CDS
T02665
Name
(RefSeq) vacuolar protein sorting-associated protein 9A
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sly04131
]
101253937
Membrane trafficking [BR:
sly04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
101253937
Protein recycling
Other Rab GTPase associated proteins
101253937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
Cir_Bir_Yir
Motif
Other DBs
NCBI-GeneID:
101253937
NCBI-ProteinID:
XP_004230072
UniProt:
A0A3Q7F6P1
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All DBs
Position
1:83822647..83835492
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AA seq
485 aa
AA seq
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MENSDVLGSSTAPLTWHDFLQRMRDPSAAEFVKSIKSFIVSFLNNVPDAERDSAAVQEFL
GNMETAFRAHSLWAGCSEEELESAGEGLEKYVMTKLFTRTFASLPEDVKVDEQLHEKIAL
IQQFVRPENLDIKPTFQNESSWLLAQKELQKINMYRAPRDKLVCILNCCKVINNILTSVS
AKDNPPGADDFLPVLIYVTIKANPPQLHSNLLYIQRFRRQTRLVSEAAYFFTNILSAESF
ISNIDARALSMDETEFETNMESARALLSGLSADNNVLDQSDQNAGPVPGADTSDAKQSFR
SNRPPHPATQPNLSVASTETNIKNEDQYSKSQSSMEKIPSLSDLEHRGASMLIKEDSISQ
VFQSFPYLYSQAGDLTVGDIEELLTNYKRLVIKYICLAKGSGIDNPSPPLPNNEEQTLPP
EFEFNTESEAASAGEPIDETQKDEPIDETLKDRVEDSSVLPKSLESDELKLKENEQLSSK
GEEGS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagcgacgtcttaggatcgtctactgcaccattgacgtggcatgatttcctt
cagcgaatgcgtgatccaagcgctgccgagttcgtcaaatccatcaaaagttttattgta
tcatttttgaacaatgttccagacgcagagagggatagtgcagccgtgcaggaattcctt
ggaaatatggaaacagcatttagagctcattcactttgggctggatgttctgaggaggag
ttggagagcgctggtgaaggacttgagaagtatgtcatgacgaagctatttacacgtaca
tttgcttcacttcctgaagatgtgaaagtcgatgaacagcttcatgagaaaattgctttg
attcaacaatttgttaggcctgagaatttggatatcaagccaacatttcaaaatgaatcg
tcatggttgcttgcacagaaggagctacaaaagataaatatgtacagggcaccaagagac
aaacttgtgtgtattcttaattgttgcaaggttatcaataatatcctgacttctgtttca
gcaaaggataaccctccaggagccgatgattttcttcccgttctcatatatgtcaccata
aaggctaacccccctcagctgcactcaaatctgctgtatatacaaaggtttaggcggcaa
acacgcctggtttctgaagcggcatacttcttcacaaacattctttctgcagaatctttc
atttcaaatattgatgcacgagctctttctatggatgagaccgagtttgaaacaaatatg
gagtctgctcgagcacttctttctggtctttcagccgacaacaatgtactggaccagagt
gatcagaacgctggacctgttcctggtgcagacacttctgatgccaaacaaagttttagg
tcaaataggcctccacaccctgctacgcagccaaatctctcagttgcatcaacagaaaca
aacattaagaacgaggatcagtattctaaaagtcagtcatcaatggaaaagatcccgtca
ctgtcggacttagaacacagaggggctagtatgcttatcaaggaggatagcatcagccaa
gtgttccaaagtttcccctacctatattcccaggctggtgatctaacagtgggtgatatc
gaagaactgctaaccaattacaagcgcctagttatcaagtatatttgccttgctaaagga
tcaggcattgacaatccatctcctccattgcccaacaatgaagaacaaactctgccccct
gagtttgaattcaacaccgaatctgaagctgcctcagcaggagagccaattgatgagaca
cagaaagacgagccaatcgatgagacactgaaagacagggtcgaggattcttcagtactt
ccaaagtctctcgagtctgatgaattaaagttaaaggaaaatgaacaactttcaagtaag
ggtgaagaagggagttaa
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