Solanum lycopersicum (tomato): 101254167
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Entry
101254167 CDS
T02665
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101254167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101254167
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101254167
U7-dependent histone pre-mRNA processing factors
101254167
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
101254167
NCBI-ProteinID:
XP_004234405
UniProt:
A0A3Q7FES3
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Position
3:complement(3727333..3746590)
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AA seq
739 aa
AA seq
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MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDTSLLQPLSRVASTVDAVLI
SHSDTFHLGALPYAMKQLGLSAPIYATEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQNVTRLTYSQNHYMSGKGEGIVIAPLVAGHLLGGTTWRITKDGEDVIYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAFNALNNQPPRRQRDQEFLDAIERTLNVGGNVLLPVDTAG
RVLELILTLEQHWTQKQLSTPIYFLSYVSSSTIDYVKSFLEWMSDSIAKSFEHTRDNAFL
LRKIKLVINKSALEEAPGPKVVMASMASLEAGFSHDLFVEWAADPKNLVMFTERGQFGTL
ARILQSDPPPKAVKVTMSRRIPLVGEELAAYEEEQNRIKREEALKATLVKEEESKASVGA
EVVTDDPMAVDTNVTHPSSNASGLHSGAFKDVLIDGFVTTSSSIAPMFPFYDNTSEWDDF
GEVINPDDYVVKDDNMEQSFMHVDGDLNGKLDEGSANLILDTTPSKVESSELTVQVKCSL
LYMDFEGRSDGRSIKSILAHVAPLKLVLVHGSAEATEHLKQHCLKHVCPQVYAPQLEETI
DVTSDLCAYKVQLSEKLMSQVLFKKLGDYEIAWVDAEVGKTENDMFSLLPLSGPSPPHKT
VLVGDLKMSDFKQFLASKGVQVEFGGGALRCGEYVTIRKVGDASQKVGGAAIQQIVLEGP
LSEEYYKIREYLYSHFYSL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgtcggttcaggtgacgccactctgtggagtatacaatgagaacccactgtct
tacctcgtctccatcgacggcttcaatttccttgtcgattgcggttggaatgaccacttt
gatacttctcttcttcaacccctatccagggtggcttcaacggtggatgctgtattgatt
tcacactctgatacatttcatcttggtgctttgccctatgccatgaaacaactcggtctt
tctgctcctatttatgccacagaaccagtgtacaggctagggttactaactatgtatgat
cagtatctctcacggaagcaagtttcagagtttgatttattcaccttggatgacattgat
tcagcattccaaaatgtgaccagattaacctactctcaaaatcattacatgtctggaaaa
ggagaaggaattgtgattgctcccctggtagctggtcatctgttaggaggtaccacctgg
aggataacaaaagacggggaggatgtcatatacgctgttgacttcaatcaccgcaaagaa
aggcatttgaacggaactgttttagaatcttttgtccgtccagctgttctaataacagat
gcttttaatgctttaaacaatcaacctcctaggcgccaaagggaccaagagtttctggat
gccatagagagaactcttaatgtcgggggaaatgttttactacctgttgatactgctggt
cgagttttggagctcatcctgacattggaacagcactggacacaaaaacagttgtccact
cccatctactttctatcatatgtatcctcaagtactattgactatgtaaagagtttcctt
gagtggatgagcgattcaattgcaaaatcttttgagcacactcgtgataatgcttttctt
ttaaggaaaattaagcttgtgatcaataagagtgctcttgaagaagctcctgggccgaag
gttgttatggcttccatggctagtttagaagctggattttcgcatgacctctttgttgaa
tgggcagctgatccaaagaatcttgttatgttcaccgagagagggcagtttggcacattg
gcacgtatacttcagtcagatccacctcctaaagctgttaaagttaccatgtcacgtaga
attcccttggttggtgaggagttggctgcttatgaggaggagcagaacaggataaaaagg
gaagaagctctcaaagctactcttgttaaagaggaggaatcaaaagcgtctgttggggca
gaagtcgtcacagatgaccccatggccgttgacaccaatgtcacacatccttcctccaat
gcttctggtctgcacagtggtgctttcaaggacgtgctgattgatggatttgtaacaaca
tcgtctagcatagccccaatgttccctttctatgataacacctctgagtgggatgacttt
ggtgaagtcatcaatccagatgattatgtggtcaaagatgacaacatggagcagtcattt
atgcatgttgatggagatttaaatggaaaacttgatgaaggatcagctaacctaatcctt
gatacaacaccctctaaagttgaatcttctgagttaacagtccaagtcaagtgttccttg
ttatacatggacttcgaaggtcgttctgatggtcgttcaatcaaatcaattcttgctcat
gttgcgcccttaaagcttgtattggtgcatggatcagctgaagccactgaacatttgaag
caacattgtctgaaacatgtttgtccacaggtctatgctccacagttggaagaaacaatt
gatgtaacttcagatttgtgtgcttataaggtccaactttctgagaagttaatgagccaa
gtgctttttaagaagcttggagactatgaaatagcatgggttgatgctgaagtggggaag
acggaaaacgacatgttctctttacttcctctttccggaccttctccaccccataaaaca
gttcttgttggagatttaaaaatgtctgatttcaagcagtttcttgcaagcaagggcgtt
caggtagaatttggtggtggggctttacgttgtggggagtatgtcaccattcgcaaagtt
ggagatgctagtcaaaaggttggaggtgcagctattcagcagattgtgcttgaaggtcca
ttatcggaagagtactataaaattcgagagtacctatattcacatttttactccctctaa
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