KEGG   Solanum lycopersicum (tomato): 101254180
Entry
101254180         CDS       T02665                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101254180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101254180
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101254180
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101254180
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 101254180
NCBI-ProteinID: XP_004235554
LinkDB
Position
3:complement(66976214..66981129)
AA seq 128 aa
MSWASPEDIYTSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLESACERAIVGDL
YCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVSEAEIRRAQKAERDSTDLKGSMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaagtccagaagatatctatacctccacttctcttgcaagttatctcgac
aagaaacttcttgtgctgttgcgagatgggcgaaagcttttaggaatacttcgttctttt
gaccaatttgctaatgctgttcttgaaagtgcatgtgagcgtgctattgttggtgatcta
tattgtgatatcccattaggtctctatattatacgtggggaaaatgttgtgttaattggt
gaactggacgtggataaggaggagcttcctccccatatgacacgtgtttcagaagctgag
ataagaagggcacagaaagcagaaagggactctacagatcttaaaggttcaatgaggaag
aggatggaatttcttgatatggattaa

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