Solanum lycopersicum (tomato): 101254180
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Entry
101254180 CDS
T02665
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101254180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101254180
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101254180
mRNA degradation factors
5'-3' decay
Lsm complex
101254180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
101254180
NCBI-ProteinID:
XP_004235554
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All DBs
Position
3:complement(66976214..66981129)
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AA seq
128 aa
AA seq
DB search
MSWASPEDIYTSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLESACERAIVGDL
YCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVSEAEIRRAQKAERDSTDLKGSMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaagtccagaagatatctatacctccacttctcttgcaagttatctcgac
aagaaacttcttgtgctgttgcgagatgggcgaaagcttttaggaatacttcgttctttt
gaccaatttgctaatgctgttcttgaaagtgcatgtgagcgtgctattgttggtgatcta
tattgtgatatcccattaggtctctatattatacgtggggaaaatgttgtgttaattggt
gaactggacgtggataaggaggagcttcctccccatatgacacgtgtttcagaagctgag
ataagaagggcacagaaagcagaaagggactctacagatcttaaaggttcaatgaggaag
aggatggaatttcttgatatggattaa
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