KEGG   Solanum lycopersicum (tomato): 101254374
Entry
101254374         CDS       T02665                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03020  RNA polymerase
sly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101254374
  09124 Replication and repair
   03420 Nucleotide excision repair
    101254374
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sly03021]
    101254374
   03400 DNA repair and recombination proteins [BR:sly03400]
    101254374
Transcription machinery [BR:sly03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     101254374
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      101254374
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 101254374
NCBI-ProteinID: XP_004236644
UniProt: A0A3Q7GS16
LinkDB
Position
4:6028308..6038504
AA seq 220 aa
MAEKGGKGFSLPKSGKSSLKSPASKGKDDSSAKSKRGRKVQFDSEGSLDTNSTKSNGKAD
IPSFKGDLGKAGKGEKAGSAGKSQKAKAPDPLELRVEQELSTKTTCMMDCEAADILQGIQ
ENMVVLSDDPAIKLPVSFDRGLAYGQRIRLYDNPQAVEQILGPLKQHGVSDGELCMIANF
PLESVDEVFAFVPSFKNRKSKLRVPLENVLAELTKLRKAA
NT seq 663 nt   +upstreamnt  +downstreamnt
atggcggagaaaggaggaaaagggttttctttgccgaaaagtggaaagtcttctctgaaa
tcccctgcatccaaagggaaggatgatagctcagcaaagtccaaaagaggaaggaaagtt
cagtttgattctgaaggatcgcttgataccaattccacaaaatcaaatggaaaagctgat
ataccatctttcaaaggtgatttgggcaaagccgggaaaggagagaaagctggcagtgct
ggtaaaagtcaaaaagcaaaagcacctgatcccttggagctgagagttgagcaagagctt
tcaaccaaaacaacatgcatgatggattgtgaagctgctgatattttgcaaggaatccaa
gagaacatggtggtattgtctgatgatccagccataaaactacctgtttcatttgacagg
ggattggcatatggtcaaaggatcaggctttatgataatccccaggctgttgaacaaata
cttgggcctctaaaacagcatggcgtttctgatggggagctttgcatgattgccaacttt
cccttggaatctgttgatgaagtgtttgcttttgttccctcatttaagaatagaaagagc
aagctgagagttcccctcgagaatgtcttggctgaactaaccaaacttagaaaggcagca
taa

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