Solanum lycopersicum (tomato): 101254606
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Entry
101254606 CDS
T02665
Name
(RefSeq) RNA-binding KH domain-containing protein PEPPER
KO
K21444
poly(rC)-binding protein 3/4
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101254606
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
101254606
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
MOEP19
Motif
Other DBs
NCBI-GeneID:
101254606
NCBI-ProteinID:
XP_004242801
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Position
7:complement(5075555..5081591)
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AA seq
479 aa
AA seq
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MASIEQIQNGSLVTHEFEDSQVKPEEADGGLVKIGQEVKPKWPGWPGSCVFRLIVPVLKV
GSIIGRKGELVKKMCEETGAKIRVLDGPPSSPDRVVLISGKEEPEAALSPAMVAVIRVFK
RVTGLSEGEDDVNLSGVAGAAFCSIRLLVASSQAVNLIGKQGSLIKPIQQNTGASIRVLS
NDEMSIYATSDERIVEIQGEALKVLKALELVIGHLRKFLVDHSVLPLFEKNYNTPAVQER
ETEPWSERTMLNTSRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPP
TKRDSLFPERESQLDSHYHSTGLSLYGQEFGLSGTRTSGVGRAGNSVITQISQTVQMQIP
LTYAEDIIGIGGANIAYIRRTSGAVLTVQESRGLADEITVEIKGMSSQVQTAQQLIQEFM
SSHKDSLPSSYGQLDTGLRQSSYSNLGGGSYPSSSYGGHHYGGGYGSFGSGGGYSSYRS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcttccatcgaacaaatccaaaatggttcacttgtaacgcatgaatttgaagattct
caagtgaaaccggaagaagcagacggaggtttagtgaaaatcggacaagaagtgaagccg
aaatggcctggatggcctgggagttgtgtgttcagattgattgtaccggtgcttaaagtt
ggaagtatcattgggcgtaaaggagaacttgttaagaagatgtgtgaggaaactggggct
aagattcgtgtacttgatggacctccttcttctcctgatcgcgttgttctaatatcaggt
aaagaagaacccgaggcagcattatctcctgctatggtagctgtaataagagtgttcaaa
cgtgtcactggtctatctgaaggtgaagatgatgtcaacttatctggagttgctggggct
gcattctgctccatcagactactcgtagcatcatcacaagctgtgaacttaataggaaaa
caagggtctttaatcaagcctatccagcaaaacactggtgcctccattcgagttctttcc
aatgatgagatgtcaatctatgcgacgtcggatgagagaattgtggaaattcaaggtgaa
gcacttaaggttcttaaagctttagaattggtgattgggcaccttaggaagttcttggtg
gatcatagcgttcttcccttgtttgaaaagaattacaatacacctgccgttcaggagcgc
gaaactgagccttggtctgagaggacgatgcttaatacctcacgatcaggacttggtgat
tatcctcctcgatcagggctaggtgattatcctcctcgatcaggactaggtgattatcct
cctcgatcaggactaggtgattatcctcctcgatcaggacttggtgattatcctcctcca
acaaagagggactcactgtttcccgaacgtgaaagccagctggactcacattatcattct
actggactttcattgtatgggcaagagtttggactttctggaactcgcacttcaggtgtg
ggtcgtgctgggaattctgttattactcagatatcccaaactgttcaaatgcaaatacca
ttaacttatgcagaagatatcattggcatagggggagcaaatattgcttatatacgccgt
actagtggtgccgttcttacggtgcaagaaagtaggggtttagctgatgaaatcacggtg
gaaataaaagggatgtcatcacaagttcagacagctcagcaacttatccaggaatttatg
agcagccacaaagattcacttccaagcagttatggccagttagatacaggcttgaggcaa
tcatcttactctaacctaggtgggggctcttatccatcatcttcatacggtggacatcat
tatggtggtggctatggatcatttggttctggtggaggatacagtagctacaggtcatga
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