Solanum lycopersicum (tomato): 101255099
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Entry
101255099 CDS
T02665
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101255099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101255099
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101255099
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
101255099
NCBI-ProteinID:
XP_010321364
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Position
5:67921676..67925956
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AA seq
852 aa
AA seq
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MEREKSSKRERGSRDGDDDDHRRNRHRDEENRNRSDDRRRQERSIEREGNRDVGHDREDE
NQHQSDDRRRDCESEGSRDRAYDRERREKSRDRDRREKSFELEVNREGSMERRNSRKRKD
RGENVDKRNVDEKRARDSEVKKDNLRVGDVKLMDKEDVEIDEEKKGKGCEMRTVKEEPKP
EPYDDGQDVDTIDTSVAMGSFSAASRTSPDKPLTLSDSPATKVSSISTTTENKGVNINKF
HKVLGKSSTDGAAHDTGKSAILSIDAKGNAYELKQRHKVLKEKLKRIPLLNKGANSTRDG
SSQMGSRESLKAHSTNVAILPPPVASSNAEILPTPGSARSTSTIATTVSANMLPSSLPHV
VGLTAQSYEAIKRAQEFSAKIEFRQDPECPSLINMFPGQMPPEVTIQPKLAKAPVLRLDA
FGREIDEQGNVVNVPKPSSTLKVNINKQNKENFQLLKPELDIDPDKNPHFDPRMGIDKNK
ILRPKKMSFQFVEEGKWSRDAEIIKLKSQFGELRTKELRTKQEQLAKAKAEPDINPNLIE
VSERIITKEKSKEPIPDVEWWEAPLLRSGAYGVMVDGNLTDDTLKMERITIYVEHPRPIE
PPAEPAPPPPQPLKLTKKEQKKMRTRRRMDQEREKQEMIRQGLLEPPKPKIKMSNLMRVL
GSEATQDPTKLEKEIRSAAAEREQAHIDRNLSRKLTPDELREKKEKKLFDDPTIAPETVV
SVYRINDLSHPQYCFKVDVNARENHMTGCAVILGDINVVVVEGGKKSIKRYGKLMLRRID
WAAAVKKEDDDEDEDKPLNKCVLVWQGTVAKSSFRRFLVHECRTEAAARKVFADAGVLHY
WNLAVDFIDDEL
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggagagagaaaaatcgagtaagagagaaagaggatccagggacggcgacgacgacgat
caccgccgtaatcgccaccgtgacgaggagaaccgaaaccggtccgatgatcggcgacgt
caagagagatcgattgagcgtgaaggaaacagagatgtaggtcacgatcgcgaggatgag
aatcaacatcaatccgatgatcggcgacgagattgtgagagtgaaggaagcagagataga
gcttatgatcgtgaaaggcgtgagaaatcacgtgatcgcgatagacgggagaaatcgttt
gagttggaagttaacagagagggttcaatggagagaaggaattcgcgtaagaggaaagat
agaggagagaatgtggataagaggaatgtcgatgagaagagagctagggattcggaggtt
aagaaggataacctgagagttggcgatgtgaagttgatggataaggaagatgtggaaatc
gatgaagaaaagaagggaaaaggatgtgaaatgagaactgtgaaggaagaaccgaaaccg
gagccctatgacgatggacaggatgttgataccattgatactagtgtagcaatgggatca
ttcagtgcagcatcaaggacttcccctgataaacctttgactcttagtgattctcctgct
accaaggtatcttcaatttctaccacaactgaaaataagggagttaatattaacaaattt
cataaggttcttgggaaatctagtacagatggggcagctcatgacactggcaagagtgca
atcttatccattgatgctaaaggaaatgcatacgagctcaaacaaaggcataaagtgctg
aaagaaaagcttaagaggattcctttgttaaacaagggtgccaactctacgagagatgga
agttcacaaatgggttccagggagagccttaaagcccattcaaccaatgtggcaatattg
ccaccaccagttgcatcttcaaatgcagagatattacccactccaggttcagcacgtagc
acatcaactatagctaccacggtatctgcaaatatgctaccgagtagcttgcctcatgtt
gtgggcctcacagcacagagctatgaagcgataaagcgtgcgcaggagttttctgctaag
attgaattccggcaggacccggaatgtccctccctcattaacatgtttcctgggcaaatg
cctccagaggttacaattcagccaaaacttgctaaagcccctgttcttcgtttggatgca
tttggcagggaaattgatgagcagggaaatgtggtcaatgtgcctaagccatctagcacc
cttaaggtaaacatcaataagcagaacaaagagaacttccaacttctcaaacctgaactt
gacattgatcctgataaaaatcctcattttgatccgaggatgggcattgacaagaacaaa
atattgaggcccaagaagatgtcatttcaatttgtggaggaaggtaaatggtcccgagat
gcagaaataatcaagttaaagagccaatttggtgaattacgaacgaaggagctgaggaca
aagcaagagcaattggcaaaggcaaaagcagagcctgacataaatccaaatcttattgag
gtgtcagagaggattatcaccaaagaaaaatcaaaggaaccaatccctgatgttgagtgg
tgggaagctcctctgttacgatctggtgcttatggtgttatggtcgacggtaacttaact
gatgatacattgaagatggagaggatcaccatttatgtggaacacccccgtcctattgag
cctcctgctgaacctgctccacctcctccacagccattgaagctgaccaagaaggaacag
aagaaaatgcgcacccggcgccgtatggatcaggagagagaaaagcaggaaatgatacgt
cagggcctgttagaaccaccaaaaccaaaaattaaaatgagcaatcttatgagagtcctt
ggatcagaagccactcaggatcccacaaagcttgaaaaggagattagaagtgctgctgct
gagcgagagcaggctcatatagacagaaatctttctcggaagctcactcctgatgagctt
cgtgagaagaaagaaaagaaactctttgacgacccaactattgcgccagagacagtagtt
tcagtatacaggatcaatgacctttcacaccctcaatattgcttcaaggtcgatgtcaat
gcacgggagaatcacatgaccgggtgtgcggttatcttgggagatataaatgtggtggta
gttgaaggtggtaaaaagtctatcaagcgatatgggaaactaatgcttaggcgaatagat
tgggctgctgctgttaagaaagaagacgatgacgaagatgaagataagcctctcaacaag
tgtgtgttagtctggcaagggactgttgctaaatcgagctttcgtaggtttttggttcac
gagtgcaggactgaggctgctgctcgtaaggtctttgctgatgctggggttcttcattac
tggaatttagctgtagacttcatagatgatgaactttaa
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