Solanum lycopersicum (tomato): 101255280
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Entry
101255280 CDS
T02665
Name
(RefSeq) oligouridylate-binding protein 1B-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101255280
03041 Spliceosome [BR:
sly03041
]
101255280
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
101255280
Spliceosome [BR:
sly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
101255280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_7
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
101255280
NCBI-ProteinID:
XP_004235558
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Position
3:complement(66934854..66939419)
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AA seq
417 aa
AA seq
DB search
MLNHRLKQEQQQALMQQALLQQQSLYHPGLIAAPQIPSGNLPPGFDPSTCRSVYIGNIHP
QVSETLLHELFSCTGLVEGCKLVRKDKSSYGFVHYYDRRSAELAIVTQNGRHLFGQPIKV
NWAYASGQREDTSSHFNVFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQQTGRSRGFG
FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDEQGSEIRSVVELTNGSSEDG
KDPASSDAPENNPQYTTVYVGNLAPEATQLDLHRHFYVIGAGVIEEVRVQRDKGFGFVRY
STHDEAALAIQMGNAQSILCGRQIKCSWGNKPTPPGTASNPLPPPAAAPLGLTATDLLTY
ERQLAMSKMAGVHALMQSQGQHPLKQASMGMSASGASQAIYDGGFQNLAAQQLMYYQ
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatcataggctaaaacaagaacaacaacaagccttgatgcagcaagctcttctt
caacaacagtcactctatcaccctggccttatagctgctcctcagataccaagtggaaat
ctacctcctgggtttgatccaagtacatgccgcagcgtgtatattgggaatattcacccc
caggtgtctgaaactcttcttcatgaacttttttcatgtactggtctggttgaagggtgc
aaacttgtaaggaaggacaagtcatcttatggctttgttcattattatgaccgtaggtct
gctgaacttgctatagttactcaaaatggaaggcacctgtttgggcagcctattaaagtt
aactgggcatatgccagtggacagagggaggatacttcaagtcacttcaatgtatttgtt
ggtgatctgagcccagaagttactgatgccatgttgtttgcttgcttctctgtttaccct
agttgctctgatgctagggtaatgtgggatcagcagactgggcgttctaggggttttgga
tttgtttctttccggaaccaacaggatgcccaaagtgcaattaatgatttaactgggaaa
tggcttggtagtagacagatacgttgtaactgggctacaaaaggagctaattctaatgat
gagcaaggctcagaaatcagaagtgtcgtggaattaactaatggatcatcagaagatggt
aaagatccagcaagtagtgatgctcctgaaaacaacccgcaatatacaactgtttatgtg
ggtaatcttgctcctgaggcgacacaactcgatctccatcgccacttttatgtcattggt
gcaggagtgatagaggaagttcgggttcaacgtgataaaggatttggttttgtaagatac
agcacccatgatgaggcagctttggcaattcaaatgggaaatgcccaatcaattttgtgt
gggagacagattaagtgttcttggggtaacaaaccaacaccacctggaacagcctcaaat
cctcttccaccaccagctgcagcgccattaggccttactgccactgatcttttgacttat
gaacggcagctagctatgagtaagatggctggtgttcatgccctcatgcaatctcagggt
caacatcccctgaagcaagcatcaatgggaatgagtgcttctggagcaagccaggctata
tatgatggtggtttccagaatcttgctgctcagcagctcatgtattaccagtaa
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