Solanum lycopersicum (tomato): 101255378
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Entry
101255378 CDS
T02665
Name
(RefSeq) WD repeat-containing protein ATCSA-1
KO
K10570
DNA excision repair protein ERCC-8
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03420
Nucleotide excision repair
sly04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101255378
09124 Replication and repair
03420 Nucleotide excision repair
101255378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sly04121
]
101255378
03400 DNA repair and recombination proteins [BR:
sly03400
]
101255378
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
101255378
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
101255378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_2nd
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_SCAP
WD_LRWD1
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_WDR75_2nd
Beta-prop_LRRK2
Beta-prop_RIG_1st
Beta-prop_WDR11_2nd
NARG2_C
Motif
Other DBs
NCBI-GeneID:
101255378
NCBI-ProteinID:
XP_004252737
UniProt:
A0A3Q7JCK3
LinkDB
All DBs
Position
12:65966419..65973152
Genome browser
AA seq
453 aa
AA seq
DB search
MWKEIGDREFGKLRPNLFSNRIKSARIASIQLSNYKDIISPHRGSVNSLQVDLTEGRYLL
SSASDASVAVYDVQRATDYDESGLIAKHKHILLVDKQHEQGHKYAISTANWYPIDTGLFI
TGSYDHYVNVWDTNTTQVVVNFKMPGKVYNTAMSPVATSHMLIAAGTEDVQVRLCDISSG
AFAHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSHNQLGRRP
SLLTRSTASKGSTLKPSSGGPNSSAKGRPSQKKMGNSASIKHSAIARQVRGFGKQRLHPG
MLSSQDRATAHYGAVNGLKVTNDGMYLLSAGSDSRLRLWDIDTGCNTLVNFETSRLQATK
ATQLAISHDSTLVFVPCMSTTKAFDLWSGKKMMDLRGHYENVNCCLYNSLDQELLTGGND
RKILVWSPSRTTTEELEGREGQAFAIDQDNWSD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagatcggagacagagaatttggcaagcttcgccctaatttattcagcaat
cgtattaagtcggctagaatcgcttctattcaactctccaactacaaagatatcatttct
cctcaccgtggctccgtcaactcccttcaggttgatttgacagagggacgatatctgtta
tcctctgcttcggatgcatcagttgctgtttatgatgtccaacgtgcaactgattacgat
gagagtggtctgattgcaaagcataaacacatacttttggttgacaagcaacatgagcag
ggccacaaatatgccatttccacagccaactggtatccaattgacacgggactttttatt
acaggctcttatgatcattatgttaatgtctgggatactaatacaacacaggtggtagtc
aatttcaaaatgcctgggaaagtgtacaatactgccatgtctccggtggcaacatcacac
atgttaattgctgctggaactgaagatgttcaagttcgtctttgtgatatttcttcgggt
gcatttgctcatacattatctggccatcgtgatggagtaatgtcggttgaatggtctgct
tctagtgagtgggttttgataacagggggatgcgatggcgcgattcgcttttgggacatc
aggcgtgcaggatgttttcgtgttttggatcagtctcataatcagcttggaagacgccca
tctcttcttacacgatccactgcaagcaagggttccacactgaaaccatcttccggaggc
ccaaattcatctgcaaaaggccgtccatctcagaaaaaaatgggaaacagtgcgagtatc
aaacactctgcaattgctagacaagtgagggggtttgggaagcagcgactgcatccaggg
atgctctctagtcaggatagagccactgctcattatggtgctgtcaatggattaaaagtg
accaatgatggaatgtatctccttagtgcaggttctgattctagattaaggttatgggat
attgatactggttgcaatacacttgtgaactttgaaacatcacgactccaggccacaaaa
gctacacagttagccatatctcatgattcaacacttgtatttgtgccatgcatgtcaact
actaaggcgtttgatttgtggtcgggcaaaaagatgatggatttacgtggccactatgag
aatgtgaactgttgtctgtacaattcactggaccaggaactattgacaggtggtaatgac
aggaaaattcttgtgtggtctccaagtagaaccactactgaggaattggaagggagggaa
gggcaagcttttgcgatcgaccaagataattggagcgactga
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